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Searched refs:sam_sparse_secondaries_p (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dsamprint.c59 static bool sam_sparse_secondaries_p; variable
105 sam_sparse_secondaries_p = sam_sparse_secondaries_p_in; in SAM_setup()
423 if (sam_sparse_secondaries_p == true && (flag & NOT_PRIMARY) != 0) { in SAM_print_nomapping()
649 if (sam_sparse_secondaries_p == true && (flag & NOT_PRIMARY) != 0) { in print_substrings()
1117 if (sam_sparse_secondaries_p == true && (flag & NOT_PRIMARY) != 0) { in print_splice()
H A Dgsnap.c490 static bool sam_sparse_secondaries_p = false; variable
2140 sam_sparse_secondaries_p = true; in parse_command_line()
3524 … clip_overlap_p,merge_overlap_p,merge_samechr_p,sam_multiple_primaries_p,sam_sparse_secondaries_p, in worker_setup()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog1170 sam_sparse_secondaries_p to omit SEQ and QUAL flags in secondary alignments