Searched refs:scoreGaps (Results 1 – 4 of 4) sorted by relevance
62 SCORE scoreGaps = 0; in ScoreSeqPairLetters() local135 SCORE scoreGaps = 0; in ScoreSeqPairGaps() local191 scoreGaps += g_scoreGapOpen; in ScoreSeqPairGaps()195 scoreGaps += g_scoreGapExtend; in ScoreSeqPairGaps()209 scoreGaps += g_scoreGapOpen; in ScoreSeqPairGaps()213 scoreGaps += g_scoreGapExtend; in ScoreSeqPairGaps()223 scoreGaps -= g_scoreGapOpen; in ScoreSeqPairGaps()224 scoreGaps += TermGapScore(true); in ScoreSeqPairGaps()226 return scoreGaps; in ScoreSeqPairGaps()271 g_SPScoreGaps += w*scoreGaps; in ObjScoreSP()[all …]
142 SCORE scoreGaps = 0; in ScoreSeqPairGaps() local196 scoreGaps += TermGapScore(true); in ScoreSeqPairGaps()198 scoreGaps += g_scoreGapOpen; in ScoreSeqPairGaps()202 scoreGaps += g_scoreGapExtend; in ScoreSeqPairGaps()216 scoreGaps += g_scoreGapOpen; in ScoreSeqPairGaps()220 scoreGaps += g_scoreGapExtend; in ScoreSeqPairGaps()230 scoreGaps -= g_scoreGapOpen; in ScoreSeqPairGaps()231 scoreGaps += TermGapScore(true); in ScoreSeqPairGaps()233 return scoreGaps; in ScoreSeqPairGaps()281 g_SPScoreGaps += w*scoreGaps; in ObjScoreSP()[all …]
78 pwScoreGaps = scoreGaps(seq1, seq2); in getScore()170 float ObjectiveScore::scoreGaps(int seq1, int seq2) in scoreGaps() function in clustalw::ObjectiveScore218 float scoreGaps = 0; in scoreGaps() local233 scoreGaps += gapOpen; in scoreGaps()239 scoreGaps += gapExtend; in scoreGaps()248 scoreGaps += gapOpen; in scoreGaps()254 scoreGaps += gapExtend; in scoreGaps()260 return scoreGaps; in scoreGaps()
34 float scoreGaps(int seq1, int seq2);