| /dports/biology/py-macs2/MACS-2.2.7.1/MACS2/ |
| H A D | callpeak_cmd.py | 301 score_column = "pscore"
303 score_column = "qscore"
312 …(ofhd_bed, name_prefix=b"%s_peak_", name=options.name.encode(), score_column=score_column, trackli…
319 … score_column=score_column, trackline=options.trackline )
325 … name=options.name.encode(), description=options.name.encode(), score_column=score_column, trackli…
329 … name=options.name.encode(), description=options.name.encode(), score_column=score_column, trackli…
|
| H A D | bdgdiff_cmd.py | 103 …efix[ 0 ], name=b"condition 1", description=b"unique regions in condition 1", score_column="score")
107 …efix[ 1 ], name=b"condition 2", description=b"unique regions in condition 2", score_column="score")
111 …refix[ 2 ], name=b"common", description=b"common regions in both conditions", score_column="score")
|
| H A D | bdgbroadcall_cmd.py | 60 …gappedPeak(bf, name_prefix=(options.oprefix+"_broadRegion").encode(), score_column="score", trackl…
|
| H A D | bdgpeakcall_cmd.py | 67 …refix.encode(), name_prefix=(options.oprefix+"_narrowPeak").encode(), score_column="score", trackl…
|
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | dynprog_simd.c | 2506 score_column = matrix[c]; in Dynprog_simd_8_nonavx2()
2733 score_column = matrix[c]; in Dynprog_simd_8_nonavx2()
3216 score_column = matrix[c]; in Dynprog_simd_8()
3488 score_column = matrix[c]; in Dynprog_simd_8()
3942 score_column = matrix[c]; in Dynprog_simd_8_upper_nonavx2()
4066 score_column = matrix[c]; in Dynprog_simd_8_upper_nonavx2()
4407 score_column = matrix[c]; in Dynprog_simd_8_upper()
4569 score_column = matrix[c]; in Dynprog_simd_8_upper()
4972 score_column = matrix[r]; in Dynprog_simd_8_lower_nonavx2()
5092 score_column = matrix[r]; in Dynprog_simd_8_lower_nonavx2()
[all …]
|
| /dports/biology/py-macs2/MACS-2.2.7.1/MACS2/IO/ |
| H A D | PeakIO.pyx | 268 bytes description=b"%s", str score_column="score", argument
297 bytes description = b"%s", str score_column="score", argument
341 return self._to_bed(name_prefix=b"peak_", score_column="score", name=b"", description=b"")
349 … return self._to_summits_bed(name_prefix=b"peak_", score_column="score", name=b"", description=b"")
353 bytes description = b"%s", str score_column="score", trackline=True): argument
355 column) is decided by score_column setting. Check the
376 description=description, score_column=score_column,
380 bytes description = b"%s", str score_column ="score", trackline=True): argument
382 (5th column) is decided by score_column setting. Check the
401 description=description, score_column=score_column,
[all …]
|
| H A D | PeakIO.c | 869 PyObject *score_column; member
886 PyObject *score_column; member
8083 __pyx_v_score_column = __pyx_optional_args->score_column; in __pyx_f_5MACS2_2IO_6PeakIO_6PeakIO__to_bed()
9037 __pyx_v_score_column = __pyx_optional_args->score_column; in __pyx_f_5MACS2_2IO_6PeakIO_6PeakIO__to_summits_bed()
9984 __pyx_t_2.score_column = __pyx_n_u_score; in __pyx_pf_5MACS2_2IO_6PeakIO_6PeakIO_22tobed()
10054 __pyx_t_2.score_column = __pyx_n_u_score; in __pyx_pf_5MACS2_2IO_6PeakIO_6PeakIO_24to_summits_bed()
10271 __pyx_t_3.score_column = __pyx_v_score_column; in __pyx_pf_5MACS2_2IO_6PeakIO_6PeakIO_26write_to_bed()
10493 __pyx_t_3.score_column = __pyx_v_score_column; in __pyx_pf_5MACS2_2IO_6PeakIO_6PeakIO_28write_to_summit_bed()
|
| /dports/games/tads/tads-3.0.8/tads2/ |
| H A D | osgen.c | 398 static osfar_t int score_column = 0; variable
510 score_column = max_column - 10; in os_strsc()
513 x = score_column; in os_strsc()
526 for (i = strlen(p) ; i + score_column <= max_column ; ++i) in os_strsc()
529 score_column = x = max_column - strlen(p); in os_strsc()
1855 for (i = S_statptr - S_statbuf ; i < score_column - 1 ; ++i) in os_print()
|
| /dports/databases/mariadb104-server/mariadb-10.4.24/storage/mroonga/ |
| H A D | ha_mroonga.hpp | 274 grn_obj *score_column; member
|
| H A D | ha_mroonga.cpp | 2129 grn_obj_unlink(info->ctx, info->score_column); in mrn_generic_ft_clear()
2175 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_find_relevance()
2213 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_get_relevance()
2260 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_find_relevance()
2292 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_get_relevance()
8555 info->score_column = grn_obj_column(info->ctx, info->result, in generic_ft_init_ext_select()
|
| /dports/databases/mariadb104-client/mariadb-10.4.24/storage/mroonga/ |
| H A D | ha_mroonga.hpp | 274 grn_obj *score_column; member
|
| H A D | ha_mroonga.cpp | 2129 grn_obj_unlink(info->ctx, info->score_column); in mrn_generic_ft_clear()
2175 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_find_relevance()
2213 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_get_relevance()
2260 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_find_relevance()
2292 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_get_relevance()
8555 info->score_column = grn_obj_column(info->ctx, info->result, in generic_ft_init_ext_select()
|
| /dports/databases/mariadb105-client/mariadb-10.5.15/storage/mroonga/ |
| H A D | ha_mroonga.hpp | 274 grn_obj *score_column; member
|
| H A D | ha_mroonga.cpp | 2105 grn_obj_unlink(info->ctx, info->score_column); in mrn_generic_ft_clear()
2151 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_find_relevance()
2189 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_get_relevance()
2236 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_find_relevance()
2268 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_get_relevance()
8510 info->score_column = grn_obj_column(info->ctx, info->result, in generic_ft_init_ext_select()
|
| /dports/databases/mariadb103-client/mariadb-10.3.34/storage/mroonga/ |
| H A D | ha_mroonga.hpp | 274 grn_obj *score_column;
|
| H A D | ha_mroonga.cpp | 2132 grn_obj_unlink(info->ctx, info->score_column);
2178 grn_obj_get_value(info->ctx, info->score_column,
2216 grn_obj_get_value(info->ctx, info->score_column,
2263 grn_obj_get_value(info->ctx, info->score_column,
2295 grn_obj_get_value(info->ctx, info->score_column,
8556 info->score_column = grn_obj_column(info->ctx, info->result,
|
| /dports/databases/mariadb103-server/mariadb-10.3.34/storage/mroonga/ |
| H A D | ha_mroonga.hpp | 274 grn_obj *score_column; member
|
| H A D | ha_mroonga.cpp | 2132 grn_obj_unlink(info->ctx, info->score_column); in mrn_generic_ft_clear()
2178 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_find_relevance()
2216 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_get_relevance()
2263 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_find_relevance()
2295 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_get_relevance()
8556 info->score_column = grn_obj_column(info->ctx, info->result, in generic_ft_init_ext_select()
|
| /dports/databases/mariadb105-server/mariadb-10.5.15/storage/mroonga/ |
| H A D | ha_mroonga.hpp | 274 grn_obj *score_column; member
|
| H A D | ha_mroonga.cpp | 2105 grn_obj_unlink(info->ctx, info->score_column); in mrn_generic_ft_clear()
2151 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_find_relevance()
2189 grn_obj_get_value(info->ctx, info->score_column, in mrn_wrapper_ft_get_relevance()
2236 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_find_relevance()
2268 grn_obj_get_value(info->ctx, info->score_column, in mrn_storage_ft_get_relevance()
8510 info->score_column = grn_obj_column(info->ctx, info->result, in generic_ft_init_ext_select()
|