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Searched refs:score_ix (Results 1 – 22 of 22) sorted by relevance

/dports/biology/fasta3/fasta-36.3.8/src/
H A Dwm_align.c33 int score_ix,
168 int nc, score_ix; in nsw_malign() local
180 score_ix = 0; in nsw_malign()
201 if (!do_rep || cur_ares->rst.score[score_ix] <= score_thresh) { return cur_ares;} in nsw_malign()
223 if (tmpl_ares->rst.score[score_ix] > score_thresh) { in nsw_malign()
224 max_sub_score = tmpl_ares->rst.score[score_ix]; in nsw_malign()
258 if (tmpr_ares->rst.score[score_ix] > score_thresh) { in nsw_malign()
265 if (tmpr_ares->rst.score[score_ix] >= max_sub_score) { in nsw_malign()
266 max_sub_score = tmpr_ares->rst.score[score_ix]; in nsw_malign()
292 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left"); in nsw_malign()
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H A Dwork_thr2.c93 int max_frame, struct pstruct *ppst, void *qf_str, int score_ix);
97 void **f_str, int score_ix, void *);
414 my_ppst, qf_str, my_ppst->score_ix);
420 my_ppst, f_str, my_ppst->score_ix, my_rand_state);
H A Ddropfx.c194 int score_ix, const char *msg);
2174 int score_ix, window; local
2182 score_ix = ppst->score_ix;
2197 if (a_res->rst.score[score_ix] <= score_thresh) {
2266 if (a_res->rst.score[ppst->score_ix] <= score_thresh) {
2365 int hoff, score_ix; local
2373 score_ix = ppst->score_ix;
2459 if (tmpl_ares->rst.score[ppst->score_ix] > score_thresh) {
2460 max_sub_score = tmpl_ares->rst.score[ppst->score_ix];
2515 if (tmpr_ares->rst.score[ppst->score_ix] > score_thresh) {
[all …]
H A Ddropfx2.c196 int score_ix, const char *msg);
2176 int score_ix, window; local
2184 score_ix = ppst->score_ix;
2199 if (a_res->rst.score[score_ix] <= score_thresh) {
2268 if (a_res->rst.score[ppst->score_ix] <= score_thresh) {
2367 int hoff, score_ix; local
2375 score_ix = ppst->score_ix;
2461 if (tmpl_ares->rst.score[ppst->score_ix] > score_thresh) {
2462 max_sub_score = tmpl_ares->rst.score[ppst->score_ix];
2517 if (tmpr_ares->rst.score[ppst->score_ix] > score_thresh) {
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H A Dcal_cons.c400 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, in calc_cons_a()
445 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, in calc_cons_a()
485 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, pstat_void, DP_FULL_FMT); in calc_cons_a()
525 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, pstat_void, DP_FULL_FMT); in calc_cons_a()
976 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, pstat_void, annot_fmt); in calc_code()
1008 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, pstat_void, annot_fmt); in calc_code()
1033 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, pstat_void, annot_fmt); in calc_code()
1067 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, pstat_void, annot_fmt); in calc_code()
H A Dmshowbest.c331 bbp->rst.score[ppst->score_ix]); in showbest()
467 l_score0 = rst_p->score[ppst->score_ix]; in showbest()
489 if (m_msp->srelv == 1) fprintf (fp, " %4d", rst_p->score[ppst->score_ix]); in showbest()
494 fprintf (fp, " %4d", rst_p->score[ppst->score_ix]); in showbest()
H A Ddropfz2.c187 int score_ix, const char *msg);
2315 if (a_res->rst.score[ppst->score_ix] < score_thresh) {
2461 int hoff, score_ix; local
2470 score_ix = ppst->score_ix;
2533 if (tmpl_ares->rst.score[ppst->score_ix] > score_thresh) {
2534 max_sub_score = tmpl_ares->rst.score[ppst->score_ix];
2590 if (tmpr_ares->rst.score[ppst->score_ix] > score_thresh) {
2604 if (tmpr_ares->rst.score[ppst->score_ix] > max_sub_score) {
2605 max_sub_score = tmpr_ares->rst.score[ppst->score_ix];
2618 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left");
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H A Ddropnfa.c117 int score_ix, const char *msg);
1336 int score_ix; in bd_malign() local
1345 score_ix = ppst->score_ix; in bd_malign()
1361 if (first_align || cur_ares->rst.score[score_ix]>score_thresh) { in bd_malign()
1463 if (tmpl_ares->rst.score[score_ix] > score_thresh) { in bd_malign()
1464 max_sub_score = tmpl_ares->rst.score[score_ix]; in bd_malign()
1501 if (tmpr_ares->rst.score[score_ix] > score_thresh) { in bd_malign()
1508 if (tmpr_ares->rst.score[score_ix] > max_sub_score) { in bd_malign()
1509 max_sub_score = tmpr_ares->rst.score[score_ix]; in bd_malign()
1529 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left"); in bd_malign()
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H A Dcompacc2.c1118 int score_ix, in merge_ares_chains() argument
1128 fprintf(stderr,"%d->",max_next->rst.score[score_ix]); in merge_ares_chains()
1134 fprintf(stderr,"%d->",max_next->rst.score[score_ix]); in merge_ares_chains()
1141 if (cur_ares->rst.score[score_ix] >= tmp_ares->rst.score[score_ix]) { in merge_ares_chains()
1152 while (max_next && max_next->rst.score[score_ix] >= alt_ares->rst.score[score_ix]) { in merge_ares_chains()
2397 sc_ix = ppst->score_ix; in save_best()
2526 find_z(bestp_arr[i]->rst.score[ppst->score_ix], in save_best()
2651 sc_ix = ppst->score_ix; in save_best2()
2835 find_z(bestp_arr[i]->rst.score[ppst->score_ix], in save_best2()
2972 sc_ix = ppst->score_ix; in buf_do_work()
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H A Dcompacc2e.c1119 int score_ix, in merge_ares_chains() argument
1129 fprintf(stderr,"%d->",max_next->rst.score[score_ix]); in merge_ares_chains()
1135 fprintf(stderr,"%d->",max_next->rst.score[score_ix]); in merge_ares_chains()
1142 if (cur_ares->rst.score[score_ix] >= tmp_ares->rst.score[score_ix]) { in merge_ares_chains()
1153 while (max_next && max_next->rst.score[score_ix] >= alt_ares->rst.score[score_ix]) { in merge_ares_chains()
2405 sc_ix = ppst->score_ix; in save_best()
2534 find_z(bestp_arr[i]->rst.score[ppst->score_ix], in save_best()
2659 sc_ix = ppst->score_ix; in save_best2()
2843 find_z(bestp_arr[i]->rst.score[ppst->score_ix], in save_best2()
2980 sc_ix = ppst->score_ix; in buf_do_work()
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H A Ddropfz3.c187 int score_ix, const char *msg);
2315 if (a_res->rst.score[ppst->score_ix] <= score_thresh) {
2461 int hoff, score_ix; local
2470 score_ix = ppst->score_ix;
2533 if (tmpl_ares->rst.score[ppst->score_ix] > score_thresh) {
2534 max_sub_score = tmpl_ares->rst.score[ppst->score_ix];
2590 if (tmpr_ares->rst.score[ppst->score_ix] > score_thresh) {
2604 if (tmpr_ares->rst.score[ppst->score_ix] > max_sub_score) {
2605 max_sub_score = tmpr_ares->rst.score[ppst->score_ix];
2618 cur_ares = merge_ares_chains(cur_ares, tmpl_ares, score_ix, "left");
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H A Dparam.h62 int score_ix; /* index to sorted score */ member
H A Ddropnsw.c76 int score_ix,
393 f_str->ss, a_res,ppst->score_ix, in do_walign()
H A Dcomp_lib9.c173 save_shuf(struct buf_head *lib_buf, int nitt, int shuff_max, int score_ix,
195 int max_frame, struct pstruct *ppst, void *qf_str, int score_ix);
199 int score_ix, void *rand_state);
1046 find_z(bestp_arr[i]->rst.score[pst.score_ix], in main()
1200 find_z(bestp_arr[i]->rst.score[pst.score_ix], in main()
1517 pst.zdb_size, m_msg.pstat_void),bestp_arr[i]->rst.score[pst.score_ix]); in main()
1522 bestp_arr[i]->repeat_thresh = bestp_arr[i]->rst.score[pst.score_ix]; in main()
2847 buf_qshuf_work(aa0s,m_msp->n0, lib_bhead_p, m_msp->nitt1, ppst, qf_str, ppst->score_ix); in seqr_chain_work()
2851 f_str, ppst->score_ix,rand_state); in seqr_chain_work()
2917 buf_qshuf_work(aa0s,m_msp->n0, lib_bhead_p, m_msp->nitt1, ppst, qf_str, ppst->score_ix); in seqr_chain_work()
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H A Dmshowalign2.c256 bbp->rst.score[ppst->score_ix]); in showalign()
276 bbp->rst.score[ppst->score_ix]); in showalign()
588 l_score0 = rst_p->score[ppst->score_ix] + score_delta; in showalign()
616 lbits, rst_p->score[ppst->score_ix] + score_delta, in showalign()
H A Dcal_cons2.c648 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, in calc_cons_u()
719 a_res->rst.score[ppst->score_ix], a_res->rst.comp, n0, n1, in calc_cons_u()
775 a_res->rst.score[ppst->score_ix], a_res->rst.comp, in calc_cons_u()
828 a_res->rst.score[ppst->score_ix], a_res->rst.comp, in calc_cons_u()
H A Dscaleswn.c258 ps_s->sample_fract = min(1.0, (double)s_info->s_cnt[ppst->score_ix]/(double)s_info->tot_scores); in process_hist()
399 z = (double)s_info.tot_scores/((double)nstats*(double)s_info.s_cnt[ppst->score_ix]); in calc_thresh()
800 opt_correct = (double)s_info.s_cnt[ppst->score_ix]/(double)s_info.tot_scores; in proc_hist_ml()
2855 ix = ppst->score_ix; in scale_scores()
2866 zscore = find_z(bptr[i]->rst.score[ppst->score_ix], bptr[i]->rst.escore, in scale_scores()
H A Dinitfa.c921 ppst->score_ix = 0; in f_initenv()
1878 ppst->score_ix = 1; in last_init()
1882 ppst->score_ix = 2; in last_init()
H A Dlsim4.c147 cur_ares->sw_score = cur_ares->rst.score[ppst->score_ix] = score; in SIM()
H A Ddropff2.c622 s_info->s_cnt[ppst->score_ix]++; in do_work()
H A Ddropfs2.c860 s_info->s_cnt[ppst->score_ix]++; in do_work()
/dports/biology/fasta3/fasta-36.3.8/doc/
H A Dreadme.v361790 score_thresh thresholds are applied to rst.score[ppst->score_ix]