Home
last modified time | relevance | path

Searched refs:score_matrix_size_ (Results 1 – 8 of 8) sorted by relevance

/dports/biology/vcflib/vcflib-1.0.2/src/
H A Dssw_cpp.cpp234 , score_matrix_size_(5) in Aligner()
253 , score_matrix_size_(5) in Aligner()
271 , score_matrix_size_(score_matrix_size) in Aligner()
280 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner()
281 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner()
344 score_matrix_size_, score_size); in Align()
388 score_matrix_size_, score_size); in Align()
416 score_matrix_size_ = 5; in SetAllDefault()
459 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild()
460 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild()
[all …]
H A Dssw_cpp.hpp195 int score_matrix_size_; member in vcflib::StripedSmithWaterman::Aligner
/dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/
H A Dssw_cpp.cpp225 , score_matrix_size_(5) in Aligner()
244 , score_matrix_size_(5) in Aligner()
262 , score_matrix_size_(score_matrix_size) in Aligner()
271 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner()
272 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner()
335 score_matrix_size_, score_size); in Align()
379 score_matrix_size_, score_size); in Align()
407 score_matrix_size_ = 5; in SetAllDefault()
450 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild()
451 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild()
[all …]
H A Dssw_cpp.hpp186 int score_matrix_size_; member in vcflib::StripedSmithWaterman::Aligner
/dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/src/
H A Dssw_cpp.cpp229 , score_matrix_size_(5) in Aligner()
248 , score_matrix_size_(5) in Aligner()
266 , score_matrix_size_(score_matrix_size) in Aligner()
275 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner()
276 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner()
339 score_matrix_size_, score_size); in Align()
383 score_matrix_size_, score_size); in Align()
411 score_matrix_size_ = 5; in SetAllDefault()
454 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild()
455 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild()
[all …]
/dports/biology/freebayes/freebayes-1.3.5/vcflib/src/
H A Dssw_cpp.cpp225 , score_matrix_size_(5) in Aligner()
244 , score_matrix_size_(5) in Aligner()
262 , score_matrix_size_(score_matrix_size) in Aligner()
271 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner()
272 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner()
335 score_matrix_size_, score_size); in Align()
379 score_matrix_size_, score_size); in Align()
407 score_matrix_size_ = 5; in SetAllDefault()
450 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild()
451 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild()
[all …]
H A Dssw_cpp.hpp186 int score_matrix_size_; member in vcflib::StripedSmithWaterman::Aligner
/dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/SeqLib/
H A Dssw_cpp.h184 int score_matrix_size_; variable