Searched refs:score_matrix_size_ (Results 1 – 8 of 8) sorted by relevance
/dports/biology/vcflib/vcflib-1.0.2/src/ |
H A D | ssw_cpp.cpp | 234 , score_matrix_size_(5) in Aligner() 253 , score_matrix_size_(5) in Aligner() 271 , score_matrix_size_(score_matrix_size) in Aligner() 280 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner() 281 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner() 344 score_matrix_size_, score_size); in Align() 388 score_matrix_size_, score_size); in Align() 416 score_matrix_size_ = 5; in SetAllDefault() 459 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild() 460 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild() [all …]
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H A D | ssw_cpp.hpp | 195 int score_matrix_size_; member in vcflib::StripedSmithWaterman::Aligner
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/dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/ |
H A D | ssw_cpp.cpp | 225 , score_matrix_size_(5) in Aligner() 244 , score_matrix_size_(5) in Aligner() 262 , score_matrix_size_(score_matrix_size) in Aligner() 271 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner() 272 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner() 335 score_matrix_size_, score_size); in Align() 379 score_matrix_size_, score_size); in Align() 407 score_matrix_size_ = 5; in SetAllDefault() 450 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild() 451 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild() [all …]
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H A D | ssw_cpp.hpp | 186 int score_matrix_size_; member in vcflib::StripedSmithWaterman::Aligner
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/dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/src/ |
H A D | ssw_cpp.cpp | 229 , score_matrix_size_(5) in Aligner() 248 , score_matrix_size_(5) in Aligner() 266 , score_matrix_size_(score_matrix_size) in Aligner() 275 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner() 276 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner() 339 score_matrix_size_, score_size); in Align() 383 score_matrix_size_, score_size); in Align() 411 score_matrix_size_ = 5; in SetAllDefault() 454 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild() 455 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild() [all …]
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/dports/biology/freebayes/freebayes-1.3.5/vcflib/src/ |
H A D | ssw_cpp.cpp | 225 , score_matrix_size_(5) in Aligner() 244 , score_matrix_size_(5) in Aligner() 262 , score_matrix_size_(score_matrix_size) in Aligner() 271 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in Aligner() 272 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in Aligner() 335 score_matrix_size_, score_size); in Align() 379 score_matrix_size_, score_size); in Align() 407 score_matrix_size_ = 5; in SetAllDefault() 450 score_matrix_ = new int8_t[score_matrix_size_ * score_matrix_size_]; in ReBuild() 451 memcpy(score_matrix_, score_matrix, sizeof(int8_t) * score_matrix_size_ * score_matrix_size_); in ReBuild() [all …]
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H A D | ssw_cpp.hpp | 186 int score_matrix_size_; member in vcflib::StripedSmithWaterman::Aligner
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/dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/SeqLib/ |
H A D | ssw_cpp.h | 184 int score_matrix_size_; variable
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