Searched refs:score_struct (Results 1 – 3 of 3) sorted by relevance
44 vector< vector<score_struct> > buildScoreMatrix(int, int);45 void fillScoreMatrix(vector<vector<score_struct> >&, vector<Sequence>, int);46 vector<score_struct> extractHighestPath(vector<vector<score_struct> >);47 vector<trace_struct> mapTraceRegionsToAlignment(vector<score_struct>);
81 …vector< vector<score_struct> > matrix = buildScoreMatrix(query.getAligned().length(), refSeqs.size… in chimeraMaligner()87 vector<score_struct> path = extractHighestPath(matrix); in chimeraMaligner()275 vector< vector<score_struct> > Maligner::buildScoreMatrix(int cols, int rows) { in buildScoreMatrix()278 vector< vector<score_struct> > m(rows); in buildScoreMatrix()284 score_struct temp; in buildScoreMatrix()304 void Maligner::fillScoreMatrix(vector<vector<score_struct> >& ms, vector<Sequence> seqs, int penalt… in fillScoreMatrix()373 vector<score_struct> Maligner::extractHighestPath(vector<vector<score_struct> > ms) { in extractHighestPath()382 score_struct highestStruct; in extractHighestPath()394 vector<score_struct> path; in extractHighestPath()401 score_struct temp = ms[rowIndex][pos]; in extractHighestPath()[all …]
77 struct score_struct { struct