Searched refs:scoringmatrices (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | tditeration.c | 264 double ***scoringmatrices, in freelocalarrays() argument
308 if( scoringmatrices ) FreeDoubleCub( scoringmatrices ); in freelocalarrays()
401 double ***scoringmatrices; in athread() local
458 makescoringmatrices( scoringmatrices, n_dis_consweight_multi ); in athread()
466 scoringmatrices = NULL; in athread()
536 scoringmatrices, in athread()
653 scoringmatrices, in athread()
698 scoringmatrices, in athread()
1299 static double ***scoringmatrices; local
1349 scoringmatrices = NULL;
[all …]
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| H A D | functions.h | 141 extern double A__align_variousdist( int **which, double ***scoringmatrices, double **dummtx, char *…
146 extern double Falign( int **whichmtx, double ***scoringmatrices, double **scoreingmtx, char **seq1…
147 extern double Falign_udpari_long( int **whichmtx, double ***scoringmatrices, double **scoringmtx, c…
148 double Falign_localhom( int **which, double ***scoringmatrices, double **scoreingmtx, char **seq1,…
153 extern double partA__align_variousdist( int **which, double ***scoringmatrices, double **dummtx, ch…
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| H A D | Falign.c | 766 double Falign( int **whichmtx, double ***scoringmatrices, double **n_dynamicmtx, in Falign() argument
1514 if( scoringmatrices ) // called by tditeration.c in Falign()
1515 …totalscore += MSalignmm_variousdist( NULL, scoringmatrices, NULL, tmpres1, tmpres2, eff1, eff2, ef… in Falign()
1527 if( scoringmatrices ) // called by tditeration.c in Falign()
1529 …totalscore += D__align_variousdist( whichmtx, scoringmatrices, NULL, tmpres1, tmpres2, eff1, eff2,… in Falign()
1542 if( scoringmatrices ) // called by tditeration.c in Falign()
1544 …totalscore += A__align_variousdist( whichmtx, scoringmatrices, NULL, tmpres1, tmpres2, eff1, eff2,… in Falign()
1619 int **whichmtx, double ***scoringmatrices, in Falign_udpari_long() argument
2395 if( scoringmatrices ) // called by tditeration.c in Falign_udpari_long()
2396 …totalscore += MSalignmm_variousdist( NULL, scoringmatrices, NULL, tmpres1, tmpres2, eff1, eff2, ef… in Falign_udpari_long()
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| H A D | Falign_localhom.c | 163 double Falign_localhom( int **whichmtx, double ***scoringmatrices, double **n_dynamicmtx, in Falign_localhom() argument
810 if( scoringmatrices ) // called by tditeration.c in Falign_localhom()
812 …totalscore += partA__align_variousdist( whichmtx, scoringmatrices, NULL, tmpres1, tmpres2, eff1, e… in Falign_localhom()
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| H A D | mltaln9.c | 322 void intergroup_score_multimtx( int **whichmtx, double ***scoringmatrices, char **seq1, char **seq2… in intergroup_score_multimtx() argument
357 tmpscore += (double)scoringmatrices[c][mn1][mn2]; in intergroup_score_multimtx()
365 tmpscore += (double)scoringmatrices[c][mn1][mn2]; in intergroup_score_multimtx()
367 tmpscore += (double)scoringmatrices[c][mn1][mn2]; in intergroup_score_multimtx()
377 tmpscore += (double)scoringmatrices[c][mn1][mn2]; in intergroup_score_multimtx()
380 tmpscore += (double)scoringmatrices[c][mn1][mn2]; in intergroup_score_multimtx()
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