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Searched refs:scram_set_option (Results 1 – 6 of 6) sorted by relevance

/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/
H A Dscramble.c422 scram_set_option(out, CRAM_OPT_VERBOSITY, verbose); in main()
440 if (scram_set_option(out, CRAM_OPT_NO_REF, 1)) in main()
453 if (scram_set_option(out, CRAM_OPT_USE_BSC, use_bsc)) in main()
461 if (scram_set_option(out, CRAM_OPT_USE_FQZ, use_fqz)) in main()
465 if (scram_set_option(out, CRAM_OPT_BINNING, binning)) in main()
469 if (scram_set_option(out, CRAM_OPT_NO_REF, no_ref)) in main()
503 if (scram_set_option(in, CRAM_OPT_THREAD_POOL, p)) in main()
505 if (scram_set_option(out, CRAM_OPT_THREAD_POOL, p)) in main()
539 if (scram_set_option(out, CRAM_OPT_REFERENCE, ref_fn)) in main()
543 scram_set_option(out, CRAM_OPT_REFERENCE, NULL); in main()
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H A Dscram_merge.c259 if (refs && scram_set_option(in[i], CRAM_OPT_SHARED_REF, refs)) in main()
285 if (scram_set_option(in[i], CRAM_OPT_RANGE, &r)) in main()
292 scram_set_option(out, CRAM_OPT_SHARED_REF, refs); in main()
294 if (scram_set_option(out, CRAM_OPT_VERBOSITY, verbose)) in main()
297 if (scram_set_option(out, CRAM_OPT_SEQS_PER_SLICE, s_opt)) in main()
301 if (scram_set_option(out, CRAM_OPT_SLICES_PER_CONTAINER, S_opt)) in main()
305 if (scram_set_option(out, CRAM_OPT_EMBED_REF, embed_ref)) in main()
315 if (scram_set_option(out, CRAM_OPT_REFERENCE, ref_fn)) in main()
H A Dscram_flagstat.c210 if (scram_set_option(in, CRAM_OPT_NTHREADS, nthreads)) in main()
214 if (scram_set_option(in, CRAM_OPT_IGNORE_MD5, ignore_md5)) in main()
216 if (scram_set_option(in, CRAM_OPT_IGNORE_CHKSUM, ignore_md5)) in main()
221 scram_set_option(in, CRAM_OPT_REQUIRED_FIELDS, in main()
245 if (scram_set_option(in, CRAM_OPT_RANGE, &r)) in main()
H A Dscram_test.c210 if (scram_set_option(in, CRAM_OPT_NTHREADS, nthreads)) in main()
215 if (scram_set_option(in, CRAM_OPT_IGNORE_MD5, ignore_md5)) in main()
218 scram_set_option(in, CRAM_OPT_REQUIRED_FIELDS, req); in main()
241 if (scram_set_option(in, CRAM_OPT_RANGE, &r)) in main()
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dscram.h251 int scram_set_option(scram_fd *fd, enum cram_option opt, ...);
H A Dscram.c380 int scram_set_option(scram_fd *fd, enum cram_option opt, ...) { in scram_set_option() function