Searched refs:scram_set_option (Results 1 – 6 of 6) sorted by relevance
/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/ |
H A D | scramble.c | 422 scram_set_option(out, CRAM_OPT_VERBOSITY, verbose); in main() 440 if (scram_set_option(out, CRAM_OPT_NO_REF, 1)) in main() 453 if (scram_set_option(out, CRAM_OPT_USE_BSC, use_bsc)) in main() 461 if (scram_set_option(out, CRAM_OPT_USE_FQZ, use_fqz)) in main() 465 if (scram_set_option(out, CRAM_OPT_BINNING, binning)) in main() 469 if (scram_set_option(out, CRAM_OPT_NO_REF, no_ref)) in main() 503 if (scram_set_option(in, CRAM_OPT_THREAD_POOL, p)) in main() 505 if (scram_set_option(out, CRAM_OPT_THREAD_POOL, p)) in main() 539 if (scram_set_option(out, CRAM_OPT_REFERENCE, ref_fn)) in main() 543 scram_set_option(out, CRAM_OPT_REFERENCE, NULL); in main() [all …]
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H A D | scram_merge.c | 259 if (refs && scram_set_option(in[i], CRAM_OPT_SHARED_REF, refs)) in main() 285 if (scram_set_option(in[i], CRAM_OPT_RANGE, &r)) in main() 292 scram_set_option(out, CRAM_OPT_SHARED_REF, refs); in main() 294 if (scram_set_option(out, CRAM_OPT_VERBOSITY, verbose)) in main() 297 if (scram_set_option(out, CRAM_OPT_SEQS_PER_SLICE, s_opt)) in main() 301 if (scram_set_option(out, CRAM_OPT_SLICES_PER_CONTAINER, S_opt)) in main() 305 if (scram_set_option(out, CRAM_OPT_EMBED_REF, embed_ref)) in main() 315 if (scram_set_option(out, CRAM_OPT_REFERENCE, ref_fn)) in main()
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H A D | scram_flagstat.c | 210 if (scram_set_option(in, CRAM_OPT_NTHREADS, nthreads)) in main() 214 if (scram_set_option(in, CRAM_OPT_IGNORE_MD5, ignore_md5)) in main() 216 if (scram_set_option(in, CRAM_OPT_IGNORE_CHKSUM, ignore_md5)) in main() 221 scram_set_option(in, CRAM_OPT_REQUIRED_FIELDS, in main() 245 if (scram_set_option(in, CRAM_OPT_RANGE, &r)) in main()
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H A D | scram_test.c | 210 if (scram_set_option(in, CRAM_OPT_NTHREADS, nthreads)) in main() 215 if (scram_set_option(in, CRAM_OPT_IGNORE_MD5, ignore_md5)) in main() 218 scram_set_option(in, CRAM_OPT_REQUIRED_FIELDS, req); in main() 241 if (scram_set_option(in, CRAM_OPT_RANGE, &r)) in main()
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/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
H A D | scram.h | 251 int scram_set_option(scram_fd *fd, enum cram_option opt, ...);
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H A D | scram.c | 380 int scram_set_option(scram_fd *fd, enum cram_option opt, ...) { in scram_set_option() function
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