Searched refs:seenPairedEnd (Results 1 – 1 of 1) sorted by relevance
925 bool seenSingleEnd = false, seenPairedEnd = false; in compareAlignedReadsToReference() local934 seenPairedEnd |= hasFlagMultiple(samRecord); in compareAlignedReadsToReference()972 seenPairedEnd |= (gsiRecord.flags & GsiRecord::FLAG_PAIRED); in compareAlignedReadsToReference()1009 if (seenPairedEnd) in compareAlignedReadsToReference()