Searched refs:seenSingleEnd (Results 1 – 1 of 1) sorted by relevance
925 bool seenSingleEnd = false, seenPairedEnd = false; in compareAlignedReadsToReference() local933 seenSingleEnd |= !hasFlagMultiple(samRecord); in compareAlignedReadsToReference()971 seenSingleEnd |= !(gsiRecord.flags & GsiRecord::FLAG_PAIRED); in compareAlignedReadsToReference()1001 if (seenSingleEnd) in compareAlignedReadsToReference()