Searched refs:sepnew (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | saledit.h | 232 NLM_EXTERN void CalculateAlignmentOffsets (SeqEntryPtr sepnew, SeqEntryPtr sepold);
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| H A D | saled.c | 3308 SeqEntryPtr sepnew=NULL; in ReadAlignmentForSeqEntry() local
3392 sepnew = MakeSequinDataFromAlignmentEx (afp, moltype, TRUE); in ReadAlignmentForSeqEntry()
3395 if (sepnew == NULL) { in ReadAlignmentForSeqEntry()
3400 if (sepnew) in ReadAlignmentForSeqEntry()
3402 salpnew = (SeqAlignPtr) FindSeqAlignInSeqEntry (sepnew, OBJ_SEQALIGN); in ReadAlignmentForSeqEntry()
3408 CalculateAlignmentOffsets (sepnew, sep); in ReadAlignmentForSeqEntry()
3413 ok = ValidateSeqAlignandACCInSeqEntry (sepnew, TRUE, FALSE, TRUE, TRUE, FALSE, FALSE); in ReadAlignmentForSeqEntry()
3429 ObjMgrFree (OBJ_SEQENTRY, (Pointer)sepnew); in ReadAlignmentForSeqEntry()
3430 sepnew=NULL; in ReadAlignmentForSeqEntry()
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| H A D | salsa.c | 5460 sepnew=NULL; in UpdateSeqAlign() local
5500 sepnew = ReadAnyAlignment (FALSE, NULL); in UpdateSeqAlign()
5501 if (sepnew) { in UpdateSeqAlign()
5502 salpnew = (SeqAlignPtr) FindSeqAlignInSeqEntry (sepnew, OBJ_SEQALIGN); in UpdateSeqAlign()
5504 ok = ValidateSeqAlignandACCInSeqEntry (sepnew, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE); in UpdateSeqAlign()
5524 ObjMgrFree (OBJ_SEQENTRY, (Pointer)sepnew); in UpdateSeqAlign()
5525 sepnew=NULL; in UpdateSeqAlign()
7386 NLM_EXTERN void CalculateAlignmentOffsets (SeqEntryPtr sepnew, SeqEntryPtr sepold) in CalculateAlignmentOffsets() argument
7402 if (sepnew == NULL || sepold == NULL) in CalculateAlignmentOffsets()
7411 salpnew = (SeqAlignPtr) FindSeqAlignInSeqEntry (sepnew, OBJ_SEQALIGN); in CalculateAlignmentOffsets()
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin4.c | 3022 SeqEntryPtr sepnew=NULL; in UpdateSeqAlignForSeqEntry() local
3067 sepnew = MakeSequinDataFromAlignmentEx (afp, moltype, TRUE); in UpdateSeqAlignForSeqEntry()
3077 if (sepnew) in UpdateSeqAlignForSeqEntry()
3079 salpnew = (SeqAlignPtr) FindSeqAlignInSeqEntry (sepnew, OBJ_SEQALIGN); in UpdateSeqAlignForSeqEntry()
3085 CalculateAlignmentOffsets (sepnew, sep); in UpdateSeqAlignForSeqEntry()
3090 ok = ValidateSeqAlignandACCInSeqEntry (sepnew, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE); in UpdateSeqAlignForSeqEntry()
3132 ObjMgrFree (OBJ_SEQENTRY, (Pointer)sepnew); in UpdateSeqAlignForSeqEntry()
3133 sepnew=NULL; in UpdateSeqAlignForSeqEntry()
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