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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/
H A Ddp_traceback_impl.h73 TSizeH seqHSize, in TracebackCoordinator_() argument
83 _initTracebackCoordinator(*this, band, seqHSize, seqVSize); in TracebackCoordinator_()
92 TSizeH seqHSize, in TracebackCoordinator_() argument
102 _initTracebackCoordinator(*this, band, seqHSize, seqVSize); in TracebackCoordinator_()
147 SEQAN_UNUSED TSizeH seqHSize,
163 … coordinator._breakpoint1 = _min(seqHSize, static_cast<TSizeH>(_max(0, upperDiagonal(band))));
502 TSizeH const & seqHSize,
520 band, seqHSize, seqVSize);
527 if (tracebackCoordinator._currColumn != static_cast<TSize>(seqHSize))
560 TSeqHSize const & seqHSize,
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/
H A Ddp_traceback_impl.h73 TSizeH seqHSize, in TracebackCoordinator_() argument
83 _initTracebackCoordinator(*this, band, seqHSize, seqVSize); in TracebackCoordinator_()
92 TSizeH seqHSize, in TracebackCoordinator_() argument
102 _initTracebackCoordinator(*this, band, seqHSize, seqVSize); in TracebackCoordinator_()
147 SEQAN_UNUSED TSizeH seqHSize,
163 … coordinator._breakpoint1 = _min(seqHSize, static_cast<TSizeH>(_max(0, upperDiagonal(band))));
502 TSizeH const & seqHSize,
520 band, seqHSize, seqVSize);
527 if (tracebackCoordinator._currColumn != static_cast<TSize>(seqHSize))
560 TSeqHSize const & seqHSize,
[all …]
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/
H A Ddp_traceback_impl.h73 TSizeH seqHSize, in TracebackCoordinator_() argument
83 _initTracebackCoordinator(*this, band, seqHSize, seqVSize); in TracebackCoordinator_()
92 TSizeH seqHSize, in TracebackCoordinator_() argument
102 _initTracebackCoordinator(*this, band, seqHSize, seqVSize); in TracebackCoordinator_()
148 TSizeH seqHSize,
164 … coordinator._breakpoint1 = _min(seqHSize, static_cast<TSizeH>(_max(0, upperDiagonal(band))));
512 TSizeH seqHSize = length(seqH);
518 SEQAN_ASSERT_LEQ(coordinate(matrixNavigator, +DPMatrixDimension_::HORIZONTAL), seqHSize);
526 band, seqHSize, seqVSize);
533 if (tracebackCoordinator._currColumn != seqHSize)
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_traceback.h263 TSizeSeqH seqHSize = length(seqH);
273 SEQAN_ASSERT_LEQ(coordinate(matrixNavigator, +DPMatrixDimension_::HORIZONTAL), seqHSize);
283 band, seqHSize, seqVSize);
289 …_recordSegment(target, seqHSize, tracebackCoordinator._currRow, seqVSize - tracebackCoordinator._c…
291 if (tracebackCoordinator._currColumn != seqHSize)
292 … _recordSegment(target, tracebackCoordinator._currColumn, tracebackCoordinator._currRow, seqHSize -
295 …_computeTraceback(target, matrixNavigator, position(matrixNavigator), seqHSize, seqVSize, band, dp…
332 …_computeTraceback(target, matrixNavigator, position(matrixNavigator), seqHSize, seqVSize, band, dp…
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_traceback.h263 TSizeSeqH seqHSize = length(seqH);
273 SEQAN_ASSERT_LEQ(coordinate(matrixNavigator, +DPMatrixDimension_::HORIZONTAL), seqHSize);
283 band, seqHSize, seqVSize);
289 …_recordSegment(target, seqHSize, tracebackCoordinator._currRow, seqVSize - tracebackCoordinator._c…
291 if (tracebackCoordinator._currColumn != seqHSize)
292 … _recordSegment(target, tracebackCoordinator._currColumn, tracebackCoordinator._currRow, seqHSize -
295 …_computeTraceback(target, matrixNavigator, position(matrixNavigator), seqHSize, seqVSize, band, dp…
332 …_computeTraceback(target, matrixNavigator, position(matrixNavigator), seqHSize, seqVSize, band, dp…
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dbanded_chain_alignment_traceback.h263 TSizeSeqH seqHSize = length(seqH);
273 SEQAN_ASSERT_LEQ(coordinate(matrixNavigator, +DPMatrixDimension_::HORIZONTAL), seqHSize);
283 band, seqHSize, seqVSize);
289 …_recordSegment(target, seqHSize, tracebackCoordinator._currRow, seqVSize - tracebackCoordinator._c…
291 if (tracebackCoordinator._currColumn != seqHSize)
292 … _recordSegment(target, tracebackCoordinator._currColumn, tracebackCoordinator._currRow, seqHSize -
/dports/archivers/p5-Compress-Zstd/Compress-Zstd-0.20/ext/zstd/lib/decompress/
H A Dzstd_decompress_block.c1282 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1283 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1284 ip += seqHSize; in ZSTD_decompressBlock_internal()
1285 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/archivers/py-borgbackup/borgbackup-1.1.17/src/borg/algorithms/zstd/lib/decompress/
H A Dzstd_decompress_block.c1376 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1377 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1378 ip += seqHSize; in ZSTD_decompressBlock_internal()
1379 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/converters/p5-Sereal-Decoder/Sereal-Decoder-4.018/zstd/decompress/
H A Dzstd_decompress_block.c1376 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1377 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1378 ip += seqHSize; in ZSTD_decompressBlock_internal()
1379 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/databases/percona57-server/percona-server-5.7.36-39/storage/rocksdb/third_party/zstd/lib/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/converters/p5-Sereal-Encoder/Sereal-Encoder-4.018/zstd/decompress/
H A Dzstd_decompress_block.c1376 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1377 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1378 ip += seqHSize; in ZSTD_decompressBlock_internal()
1379 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/databases/percona57-client/percona-server-5.7.36-39/storage/rocksdb/third_party/zstd/lib/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/mail/rspamd-devel/rspamd-93430bb/contrib/zstd/
H A Dzstd_decompress_block.c1376 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1377 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1378 ip += seqHSize; in ZSTD_decompressBlock_internal()
1379 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/mail/rspamd/rspamd-3.1/contrib/zstd/
H A Dzstd_decompress_block.c1376 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1377 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1378 ip += seqHSize; in ZSTD_decompressBlock_internal()
1379 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/sysutils/helmfile/vault-f6547fa8e820/vendor/github.com/DataDog/zstd/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/devel/mercurial/mercurial-6.0/contrib/python-zstandard/zstd/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/sysutils/vector/vector-0.10.0/cargo-crates/zstd-sys-1.4.15+zstd.1.4.4/zstd/lib/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/devel/godot/godot-3.2.3-stable/thirdparty/zstd/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/databases/percona57-pam-for-mysql/percona-server-5.7.36-39/storage/rocksdb/third_party/zstd/lib/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/textproc/ripgrep-all/ripgrep-all-0.9.6/cargo-crates/zstd-sys-1.4.15+zstd.1.4.4/zstd/lib/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/devel/upp/upp/uppsrc/plugin/zstd/lib/
H A Dzstd_decompress_block.c1376 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1377 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1378 ip += seqHSize; in ZSTD_decompressBlock_internal()
1379 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/net-mgmt/semaphore/semaphore-2.6.8/vendor/go.mongodb.org/mongo-driver/vendor/github.com/DataDog/zstd/
H A Dzstd_decompress_block.c1268 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1269 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1270 ip += seqHSize; in ZSTD_decompressBlock_internal()
1271 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/emulators/dolphin-emu/dolphin-3152428/Externals/zstd/lib/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/devel/py-tables/tables-3.6.1/c-blosc/internal-complibs/zstd-1.3.8/decompress/
H A Dzstd_decompress_block.c1264 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1265 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1266 ip += seqHSize; in ZSTD_decompressBlock_internal()
1267 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()
/dports/devel/godot-tools/godot-3.2.3-stable/thirdparty/zstd/decompress/
H A Dzstd_decompress_block.c1280 size_t const seqHSize = ZSTD_decodeSeqHeaders(dctx, &nbSeq, ip, srcSize); in ZSTD_decompressBlock_internal() local
1281 if (ZSTD_isError(seqHSize)) return seqHSize; in ZSTD_decompressBlock_internal()
1282 ip += seqHSize; in ZSTD_decompressBlock_internal()
1283 srcSize -= seqHSize; in ZSTD_decompressBlock_internal()

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