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/dports/biology/py-biopython/biopython-1.79/Tests/
H A Dtest_ProtParam.py21 …self.seq_text = "MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLA…
22 self.analysis = ProtParam.ProteinAnalysis(self.seq_text)
28 self.assertEqual(count_dict[i], self.seq_text.count(i))
33 seq_len = len(self.seq_text)
36 percent_dict[i], self.seq_text.count(i) / float(seq_len)
45 self.analysis = ProtParam.ProteinAnalysis(self.seq_text, monoisotopic=True)
53 mw_2 = molecular_weight(Seq(self.seq_text), seq_type="protein")
60 self.analysis = ProtParam.ProteinAnalysis(self.seq_text, monoisotopic=True)
63 Seq(self.seq_text), seq_type="protein", monoisotopic=True
/dports/biology/p5-Bio-Phylo/Bio-Phylo-v2.0.1/lib/Bio/Phylo/Matrices/
H A DDatumRole.pm793 my $seq_text = $self->get_type_object->join( \@tmp );
795 $seq->get_xml_tag . "\n$seq_text\n" . "</" . $seq->get_tag . ">";
/dports/science/py-DendroPy/DendroPy-4.4.0/src/dendropy/interop/
H A Dgenbank.py321 seq_text = gb_rec.sequence_text.upper()
322 for col_ind, c in enumerate(seq_text):
330 … len(self._recs), gb_rec.primary_accession, gb_rec.gi, gb_rec.request_key, c, col_ind+1, seq_text))
/dports/biology/ncbi-toolkit/ncbi/sequin/
H A Dsequin2.c24088 static CharPtr ReformatSequenceText (CharPtr seq_text) in ReformatSequenceText() argument
24097 if (StringHasNoText (seq_text)) in ReformatSequenceText()
24099 MemFree (seq_text); in ReformatSequenceText()
24102 len = StringLen (seq_text); in ReformatSequenceText()
24108 return seq_text; in ReformatSequenceText()
24112 for (src = seq_text; *src != 0; src++) in ReformatSequenceText()
24128 MemFree (seq_text); in ReformatSequenceText()