Searched refs:seq_text (Results 1 – 4 of 4) sorted by relevance
/dports/biology/py-biopython/biopython-1.79/Tests/ |
H A D | test_ProtParam.py | 21 …self.seq_text = "MAEGEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLA… 22 self.analysis = ProtParam.ProteinAnalysis(self.seq_text) 28 self.assertEqual(count_dict[i], self.seq_text.count(i)) 33 seq_len = len(self.seq_text) 36 percent_dict[i], self.seq_text.count(i) / float(seq_len) 45 self.analysis = ProtParam.ProteinAnalysis(self.seq_text, monoisotopic=True) 53 mw_2 = molecular_weight(Seq(self.seq_text), seq_type="protein") 60 self.analysis = ProtParam.ProteinAnalysis(self.seq_text, monoisotopic=True) 63 Seq(self.seq_text), seq_type="protein", monoisotopic=True
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/dports/biology/p5-Bio-Phylo/Bio-Phylo-v2.0.1/lib/Bio/Phylo/Matrices/ |
H A D | DatumRole.pm | 793 my $seq_text = $self->get_type_object->join( \@tmp ); 795 $seq->get_xml_tag . "\n$seq_text\n" . "</" . $seq->get_tag . ">";
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/dports/science/py-DendroPy/DendroPy-4.4.0/src/dendropy/interop/ |
H A D | genbank.py | 321 seq_text = gb_rec.sequence_text.upper() 322 for col_ind, c in enumerate(seq_text): 330 … len(self._recs), gb_rec.primary_accession, gb_rec.gi, gb_rec.request_key, c, col_ind+1, seq_text))
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/dports/biology/ncbi-toolkit/ncbi/sequin/ |
H A D | sequin2.c | 24088 static CharPtr ReformatSequenceText (CharPtr seq_text) in ReformatSequenceText() argument 24097 if (StringHasNoText (seq_text)) in ReformatSequenceText() 24099 MemFree (seq_text); in ReformatSequenceText() 24102 len = StringLen (seq_text); in ReformatSequenceText() 24108 return seq_text; in ReformatSequenceText() 24112 for (src = seq_text; *src != 0; src++) in ReformatSequenceText() 24128 MemFree (seq_text); in ReformatSequenceText()
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