| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cddalignview/ |
| H A D | cav_alignset.cpp | 66 SeqAlignList seqaligns; in AlignmentSet() local
91 seqaligns.push_back(a->GetPointer()); in AlignmentSet()
94 if (seqaligns.size() == 0) { in AlignmentSet()
103 SeqAlignList::const_iterator a, ae = seqaligns.end(); in AlignmentSet()
104 for (a=seqaligns.begin(); a!=ae; ++a) { in AlignmentSet()
135 SeqAlignList::const_iterator s, se = seqaligns.end(); in AlignmentSet()
137 for (s=seqaligns.begin(); s!=se; ++s, ++i) { in AlignmentSet()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | remote_search.cpp | 183 s_SplitAlignVectorBySubjects(TSeqAlignVector seqaligns) in s_SplitAlignVectorBySubjects() argument
186 NON_CONST_ITERATE(TSeqAlignVector, itr, seqaligns) { in s_SplitAlignVectorBySubjects()
226 return seqaligns; in s_SplitAlignVectorBySubjects()
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| H A D | cdd_pssm_input.cpp | 72 CConstRef<objects::CSeq_align_set> seqaligns, in BEGIN_SCOPE()
82 m_SeqalignSet(seqaligns), in BEGIN_SCOPE()
95 if (seqaligns.Empty()) { in BEGIN_SCOPE()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | remote_search.cpp | 183 s_SplitAlignVectorBySubjects(TSeqAlignVector seqaligns) in s_SplitAlignVectorBySubjects() argument
186 NON_CONST_ITERATE(TSeqAlignVector, itr, seqaligns) { in s_SplitAlignVectorBySubjects()
226 return seqaligns; in s_SplitAlignVectorBySubjects()
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| H A D | cdd_pssm_input.cpp | 72 CConstRef<objects::CSeq_align_set> seqaligns, in BEGIN_SCOPE()
82 m_SeqalignSet(seqaligns), in BEGIN_SCOPE()
95 if (seqaligns.Empty()) { in BEGIN_SCOPE()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/api/ |
| H A D | cdd_pssm_input.hpp | 123 CConstRef<objects::CSeq_align_set> seqaligns,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/api/ |
| H A D | cdd_pssm_input.hpp | 123 CConstRef<objects::CSeq_align_set> seqaligns,
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| /dports/biology/ncbi-toolkit/ncbi/object/ |
| H A D | objmime.h | 300 struct seqannot PNTR seqaligns; /* manual change */ member
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| H A D | objmime.c | 1952 AsnGenericUserSeqOfFree(ptr -> seqaligns, (AsnOptFreeFunc) SeqAnnotFree); in BundleSeqsAlignsFree()
2016 …ptr -> seqaligns = AsnGenericUserSeqOfAsnRead(aip, amp, atp, &isError, (AsnReadFunc) SeqAnnotAsnRe… in BundleSeqsAlignsAsnRead()
2017 if (isError && ptr -> seqaligns == NULL) { in BundleSeqsAlignsAsnRead()
2102 …AsnGenericUserSeqOfAsnWrite(ptr -> seqaligns, (AsnWriteFunc) SeqAnnotAsnWrite, aip, BUNDLE_SEQS_AL… in BundleSeqsAlignsAsnWrite()
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| /dports/biology/ncbi-toolkit/ncbi/asn/ |
| H A D | ncbimime.asn | 33 seqaligns SET OF Seq-annot OPTIONAL, -- sequence alignments
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| H A D | asn.all | 4086 seqaligns SET OF Seq-annot OPTIONAL, -- sequence alignments
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/ncbimime/ |
| H A D | ncbimime.asn | 33 seqaligns SET OF Seq-annot OPTIONAL, -- sequence alignments
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/ncbimime/ |
| H A D | ncbimime.asn | 33 seqaligns SET OF Seq-annot OPTIONAL, -- sequence alignments
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/newVSch/ |
| H A D | vast2cn3dDB_comb.cpp | 684 bsap->seqaligns = psaAlignHead; in VastToCn3DAndAli()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/newvast/ |
| H A D | vast2cn3dDB.c | 833 bsap->seqaligns = psaAlignHead; in VastToCn3DAndAli()
|