Home
last modified time | relevance | path

Searched refs:seqid_subj (Results 1 – 3 of 3) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/splign/
H A Dsplign_app.cpp790 CRef<CSeq_id> seqid_subj; in Run() local
792 seqid_subj = x_ReadFastaSetId(args["subj"], scope); in Run()
798 seqid_subj = FindBestChoice(ids, objects::CSeq_id::Score); in Run()
799 if(!seqid_subj) seqid_subj = new CSeq_id(CSeq_id::e_Local, id_list); in Run()
802 seqid_subj.Reset (new CSeq_id(CSeq_id::e_Local, id_list)); in Run()
812 x_GetBl2SeqHits(seqid_query, seqid_subj, scope, &hitrefs); in Run()
850 CRef<objects::CSeq_id> seqid_subj, in x_GetBl2SeqHits() argument
863 seqloc_subj->SetWhole().Assign(*seqid_subj); in x_GetBl2SeqHits()
H A Dsplign_app.hpp90 CRef<objects::CSeq_id> seqid_subj,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/util/
H A Dcompartment_finder.hpp1556 CRef<CSeq_id> seqid_query (new CSeq_id), seqid_subj (new CSeq_id); in AsSeqAlignSet() local
1561 seqid_subj->Assign(*(h.GetSubjId())); in AsSeqAlignSet()
1588 CRef<CSeq_loc> seq_loc (new CSeq_loc (*seqid_subj, range_min, in AsSeqAlignSet()
1607 *seqid_subj, h.GetSubjMin(), h.GetSubjMax(), subj_strand)); in AsSeqAlignSet()
1616 ds.SetIds().push_back(seqid_subj); in AsSeqAlignSet()