Searched refs:seqid_subj (Results 1 – 3 of 3) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/splign/ |
H A D | splign_app.cpp | 790 CRef<CSeq_id> seqid_subj; in Run() local 792 seqid_subj = x_ReadFastaSetId(args["subj"], scope); in Run() 798 seqid_subj = FindBestChoice(ids, objects::CSeq_id::Score); in Run() 799 if(!seqid_subj) seqid_subj = new CSeq_id(CSeq_id::e_Local, id_list); in Run() 802 seqid_subj.Reset (new CSeq_id(CSeq_id::e_Local, id_list)); in Run() 812 x_GetBl2SeqHits(seqid_query, seqid_subj, scope, &hitrefs); in Run() 850 CRef<objects::CSeq_id> seqid_subj, in x_GetBl2SeqHits() argument 863 seqloc_subj->SetWhole().Assign(*seqid_subj); in x_GetBl2SeqHits()
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H A D | splign_app.hpp | 90 CRef<objects::CSeq_id> seqid_subj,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/util/ |
H A D | compartment_finder.hpp | 1556 CRef<CSeq_id> seqid_query (new CSeq_id), seqid_subj (new CSeq_id); in AsSeqAlignSet() local 1561 seqid_subj->Assign(*(h.GetSubjId())); in AsSeqAlignSet() 1588 CRef<CSeq_loc> seq_loc (new CSeq_loc (*seqid_subj, range_min, in AsSeqAlignSet() 1607 *seqid_subj, h.GetSubjMin(), h.GetSubjMax(), subj_strand)); in AsSeqAlignSet() 1616 ds.SetIds().push_back(seqid_subj); in AsSeqAlignSet()
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