| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/more/ |
| H A D | GromacsReader.java | 85 setAtomCoord(atom); in readAtoms()
139 setAtomCoord(atoms[i]); in readUnitCell()
|
| H A D | Mol2Reader.java | 315 setAtomCoord(atoms[nAtoms + i]); in readCrystalInfo()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/simple/ |
| H A D | MopacArchiveReader.java | 140 setAtomCoord(atom); in readCoordinates()
161 setAtomCoord(vAtoms.get(i)); in readCoordinates()
|
| H A D | InputReader.java | 545 setAtomCoord(atom); in parseAtomTokens()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/xml/ |
| H A D | XmlXsdReader.java | 127 parent.setAtomCoord(atom); in processEndElement()
|
| H A D | XmlArgusReader.java | 142 parent.setAtomCoord(atom); in processEndElement()
|
| H A D | XmlOdysseyReader.java | 123 parent.setAtomCoord(atoms[i]); in processStartElement()
|
| H A D | XmlChem3dReader.java | 168 parent.setAtomCoord(atom); in processEndElement()
|
| H A D | XmlCmlReader.java | 738 parent.setAtomCoord(atom); in addAtom()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/xtal/ |
| H A D | AbinitReader.java | 123 setAtomCoord(atoms[i]); in applySymmetry()
|
| H A D | EspressoReader.java | 198 setAtomCoord(atom); in readAtoms()
|
| H A D | DmolReader.java | 117 setAtomCoord(atom); in readCoord()
|
| H A D | SiestaReader.java | 324 setAtomCoord(atoms[i]); in readAtomsCartGeomThenCell()
|
| H A D | MagresReader.java | 251 setAtomCoord(atom); in readAtom()
|
| H A D | CastepReader.java | 405 setAtomCoord(asc.atoms[i]); in finalizeSubclassReader()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelset/ |
| H A D | AtomCollection.java | 521 setAtomCoord(i, xyz.x, xyz.y, xyz.z); in setAtomCoord2()
543 public void setAtomCoord(int atomIndex, float x, float y, float z) { in setAtomCoord() method in AtomCollection
616 setAtomCoord(i, fValue, atom.y, atom.z); in setAPa()
620 setAtomCoord(i, atom.x, fValue, atom.z); in setAPa()
624 setAtomCoord(i, atom.x, atom.y, fValue); in setAPa()
1066 setAtomCoord(atomIndex, x, y, z); in loadCoordinates()
|
| H A D | ModelLoader.java | 1623 modelSet.setAtomCoord(i, xyz.x, xyz.y, xyz.z); in createAtomDataSet()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/smarter/ |
| H A D | AtomSetCollectionReader.java | 1229 setAtomCoord(atom); in setAtomCoordXYZ()
1255 public void setAtomCoord(Atom atom) { in setAtomCoord() method in AtomSetCollectionReader
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/cif/ |
| H A D | CifReader.java | 1523 setAtomCoord(atom); in addCifAtom()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/viewer/ |
| H A D | Viewer.java | 9104 ms.setAtomCoord(h.i, p.x, p.y, p.z); in setHydrogens()
|