Searched refs:setFromSite (Results 1 – 6 of 6) sorted by relevance
584 clone.setFromSite(ss); in writeSam()604 clone.setFromSite(ss); in writeSam()640 clone.setFromSite(ss); in writeSam()
1374 public void setFromSite(SiteScore ss){ in setFromSite() method in Read1402 setFromSite(originalSite); in setFromOriginalSite()1412 setFromSite(ss); in setFromTopSite()1425 setFromSite(ss0); in setFromTopSite()1443 setFromSite(sites.get(0)); in setFromTopSite()
380 r.setFromSite(ss); in multiprocessRead_old()408 r.setFromSite(ss); in multiprocessRead()
325 r.setFromSite(ss); in multiprocessRead_old()354 r.setFromSite(ss); in multiprocessRead()
523 r.setFromSite(ss);
225 r.setFromSite(ss); in realign_new()