Searched refs:setKSnps (Results 1 – 4 of 4) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | param.cpp | 158 if (ReadFile_snps(file_ksnps, setKSnps) == false) { in ReadFiles() 162 setKSnps.clear(); in ReadFiles() 498 LOCO_set_Snps(setKSnps, setGWASnps, mapRS2chr, loco); in ReadFiles() 1128 if (setKSnps.size()) in CheckData() 1312 if (BimbamKin(file_str, setKSnps, indicator_snp, a_mode - 20, d_pace, in CalcKin() 1743 if (BimbamKinUncentered(file_str, setKSnps, d_pace, indicator_idv, in CalcS() 1749 if (BimbamKinUncentered(file_str, setKSnps, d_pace, indicator_idv, in CalcS() 1757 if (MFILEKin(1, file_mbfile, setKSnps, d_pace, indicator_idv, in CalcS() 1763 if (MFILEKin(1, file_mbfile, setKSnps, d_pace, indicator_idv, in CalcS() 1771 if (MFILEKin(0, file_mgeno, setKSnps, d_pace, indicator_idv, in CalcS() [all …]
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H A D | param.h | 326 set<string> setKSnps; // Set of snps for K (-ksnps and LOCO) variable
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H A D | gemma_io.h | 148 const set<string> setKSnps, const int display_pace,
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H A D | gemma_io.cpp | 3156 const set<string> setKSnps, const int display_pace, in MFILEKin() argument 3190 BimbamKinUncentered(file_name, setKSnps, display_pace, indicator_idv, in MFILEKin()
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