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Searched refs:setKSnps (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dparam.cpp158 if (ReadFile_snps(file_ksnps, setKSnps) == false) { in ReadFiles()
162 setKSnps.clear(); in ReadFiles()
498 LOCO_set_Snps(setKSnps, setGWASnps, mapRS2chr, loco); in ReadFiles()
1128 if (setKSnps.size()) in CheckData()
1312 if (BimbamKin(file_str, setKSnps, indicator_snp, a_mode - 20, d_pace, in CalcKin()
1743 if (BimbamKinUncentered(file_str, setKSnps, d_pace, indicator_idv, in CalcS()
1749 if (BimbamKinUncentered(file_str, setKSnps, d_pace, indicator_idv, in CalcS()
1757 if (MFILEKin(1, file_mbfile, setKSnps, d_pace, indicator_idv, in CalcS()
1763 if (MFILEKin(1, file_mbfile, setKSnps, d_pace, indicator_idv, in CalcS()
1771 if (MFILEKin(0, file_mgeno, setKSnps, d_pace, indicator_idv, in CalcS()
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H A Dparam.h326 set<string> setKSnps; // Set of snps for K (-ksnps and LOCO) variable
H A Dgemma_io.h148 const set<string> setKSnps, const int display_pace,
H A Dgemma_io.cpp3156 const set<string> setKSnps, const int display_pace, in MFILEKin() argument
3190 BimbamKinUncentered(file_name, setKSnps, display_pace, indicator_idv, in MFILEKin()