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Searched refs:setShortMatch (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bbmap/bbmap/current/var2/
H A DRealigner.java165 r.setShortMatch(true); in realign()
/dports/biology/bbmap/bbmap/current/stream/
H A DRead.java985 setShortMatch(true); in toText()
1084 setShortMatch(oldshortmatch); in toText()
2738 setShortMatch(false); in countErrors()
2776 setShortMatch(true); in toShortMatchString()
2813 setShortMatch(false); in toLongMatchString()
3807 public void setShortMatch(boolean b){ in setShortMatch() method in Read
H A DSamLine.java2155 r.setShortMatch(true); in toRead()
/dports/biology/bbmap/bbmap/current/align2/
H A DTranslateColorspaceRead.java61 r.setShortMatch(false); in realignByReversingRef()