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Searched refs:shortoligo_nt (Results 1 – 7 of 7) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dsnpindex.c177 shortoligo_nt (Oligospace_T oligo, int oligosize) { in shortoligo_nt() function
558 nt = shortoligo_nt(oligo,index1part); in process_snp_block()
580 debug1(nt = shortoligo_nt(oligo,index1part); in process_snp_block()
592 debug1(nt = shortoligo_nt(oligo,index1part); in process_snp_block()
602 debug1(nt = shortoligo_nt(oligo,index1part); in process_snp_block()
1027 nt = shortoligo_nt(oligo,index1part); in merge_positions8()
1052 nt = shortoligo_nt(oligo,index1part); in merge_positions8()
1131 nt = shortoligo_nt(oligo,index1part); in merge_positions4()
1151 nt = shortoligo_nt(oligo,index1part); in merge_positions4()
H A Datoiindex.c192 shortoligo_nt (Oligospace_T oligo, int oligosize) {
237 nt1 = shortoligo_nt(oligoi,index1part);
238 nt2 = shortoligo_nt(reduced,index1part);
282 nt1 = shortoligo_nt(oligoi,index1part);
283 nt2 = shortoligo_nt(reduced,index1part);
H A Dcmetindex.c192 shortoligo_nt (Oligospace_T oligo, int oligosize) {
237 nt1 = shortoligo_nt(oligoi,index1part);
238 nt2 = shortoligo_nt(reduced,index1part);
282 nt1 = shortoligo_nt(oligoi,index1part);
283 nt2 = shortoligo_nt(reduced,index1part);
H A Dregiondb.c166 shortoligo_nt (Oligospace_T oligo, Width_T oligosize) { in shortoligo_nt() function
1281 shortoligo_nt(oligo0,this->region1part),validp_0, in Regiondb_get_univdiagonals()
1282 shortoligo_nt(oligo1,this->region1part),validp_1)); in Regiondb_get_univdiagonals()
1332 shortoligo_nt(oligo0,this->region1part),validp_0, in Regiondb_get_univdiagonals()
1333 shortoligo_nt(oligo1,this->region1part),validp_1)); in Regiondb_get_univdiagonals()
H A Dindexdb.c1773 shortoligo_nt (Oligospace_T oligo, Width_T oligosize) { in shortoligo_nt() function
2353 debug0(printf("%06X (%s)\n",oligo,shortoligo_nt(oligo,index1part)));
H A Doligoindex_hr.c8975 nt = shortoligo_nt(i,indexsize); in dump_allocations()
9001 nt = shortoligo_nt(i,indexsize); in dump_positions()
33153 nt = shortoligo_nt(i,indexsize); in positions_compare()
33171 nt = shortoligo_nt(i,indexsize); in positions_compare()
33190 nt = shortoligo_nt(i,indexsize); in positions_compare()
33685 debug(nt = shortoligo_nt(masked,indexsize);
33692 debug(nt = shortoligo_nt(masked,indexsize);
33698 debug(nt = shortoligo_nt(masked,indexsize);
33705 debug(nt = shortoligo_nt(masked,indexsize);
33998 nt = shortoligo_nt(oligo,indexsize); in Oligoindex_clear_inquery()
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H A Dindexdb-write.c1865 debug1(nt = shortoligo_nt(masked,index1part);