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Searched refs:simC (Results 1 – 14 of 14) sorted by relevance

/dports/biology/ddocent/dDocent-2.7.8/scripts/untested/old/
H A DdDocent.sh82 simC=0.9
86 simC=$newC
89 simC=0.9
102 simC=0.9
106 simC=$newC2
109 simC=0.9
261 cd-hit-est -i rainbowN -o referencegenome -T 0 -c $simC -M 0 -l 30 &>cdhit.log
H A DdDocent.sh.backup106 simC=0.9
116 simC=$newC
122 cd-hit-est -i rainbowN -o referencegenome -T 0 -c $simC -M 0 -l 30 &>cdhit.log
/dports/biology/ddocent/dDocent-2.7.8/scripts/
H A Dremake_reference.sh58 simC=$3
73 simC=$3
352 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log
370 Reference $CUTOFF $CUTOFF2 $simC
H A DRefMapOpt.sh125 simC=$5
158 simC=$3
437 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log
492 Reference $r $j $simC
H A DReferenceOpt.sh86 simC=$3
365 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log
H A Dtest86 simC=$3
364 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log
/dports/biology/ddocent/dDocent-2.7.8/
H A DdDocent_ngs.sh174 simC=$(grep -A1 Simi $CONFIG | tail -1)
213 echo $simC >> dDocent.runs
698 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC
810 simC=0.9
814 simC=$newC
817 simC=0.9
H A DdDocent226 simC=$(grep -A1 Simi $CONFIG | tail -1)
268 echo $simC >> dDocent.runs
1085 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log
1223 simC=0.9
1227 simC=$newC
1230 simC=0.9
/dports/science/R-cran-Epi/Epi/inst/doc/
H A DsimLexis.R263 system.time( simC <- simLexis( Tr.c, globalVar
267 summary( simC, by="sex" )
379 CoxM <- pState( nState( subset(simC,sex=="M"),
384 CoxF <- pState( nState( subset(simC,sex=="F"),
/dports/science/R-cran-Epi/Epi/vignettes/
H A DsimLexis.R263 system.time( simC <- simLexis( Tr.c, globalVar
267 summary( simC, by="sex" )
379 CoxM <- pState( nState( subset(simC,sex=="M"),
384 CoxF <- pState( nState( subset(simC,sex=="F"),
H A DsimLexis.rnw646 system.time( simC <- simLexis( Tr.c,
650 summary( simC, by="sex" )
789 CoxM <- pState( nState( subset(simC,sex=="M"),
794 CoxF <- pState( nState( subset(simC,sex=="F"),
H A DsL.tex970 > system.time( simC <- simLexis( Tr.c,
980 > summary( simC, by="sex" )
1180 > CoxM <- pState( nState( subset(simC,sex=="M"),
1185 > CoxF <- pState( nState( subset(simC,sex=="F"),
H A DsimLexis.tex970 > system.time( simC <- simLexis( Tr.c,
980 > summary( simC, by="sex" )
1180 > CoxM <- pState( nState( subset(simC,sex=="M"),
1185 > CoxF <- pState( nState( subset(simC,sex=="F"),
/dports/biology/ddocent/dDocent-2.7.8/Outdated/
H A DdDocent.GATK137 simC=0.9
141 simC=$newC
144 simC=0.9
715 cd-hit-est -i rainbow.fasta -o reference.fasta -mask N -M 0 -T 0 -c $simC &>cdhit.log