Searched refs:simC (Results 1 – 14 of 14) sorted by relevance
/dports/biology/ddocent/dDocent-2.7.8/scripts/untested/old/ |
H A D | dDocent.sh | 82 simC=0.9 86 simC=$newC 89 simC=0.9 102 simC=0.9 106 simC=$newC2 109 simC=0.9 261 cd-hit-est -i rainbowN -o referencegenome -T 0 -c $simC -M 0 -l 30 &>cdhit.log
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H A D | dDocent.sh.backup | 106 simC=0.9 116 simC=$newC 122 cd-hit-est -i rainbowN -o referencegenome -T 0 -c $simC -M 0 -l 30 &>cdhit.log
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/dports/biology/ddocent/dDocent-2.7.8/scripts/ |
H A D | remake_reference.sh | 58 simC=$3 73 simC=$3 352 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log 370 Reference $CUTOFF $CUTOFF2 $simC
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H A D | RefMapOpt.sh | 125 simC=$5 158 simC=$3 437 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log 492 Reference $r $j $simC
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H A D | ReferenceOpt.sh | 86 simC=$3 365 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log
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H A D | test | 86 simC=$3 364 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log
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/dports/biology/ddocent/dDocent-2.7.8/ |
H A D | dDocent_ngs.sh | 174 simC=$(grep -A1 Simi $CONFIG | tail -1) 213 echo $simC >> dDocent.runs 698 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC 810 simC=0.9 814 simC=$newC 817 simC=0.9
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H A D | dDocent | 226 simC=$(grep -A1 Simi $CONFIG | tail -1) 268 echo $simC >> dDocent.runs 1085 cd-hit-est -i totalover.fasta -o reference.fasta.original -M 0 -T 0 -c $simC &>cdhit2.log 1223 simC=0.9 1227 simC=$newC 1230 simC=0.9
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/dports/science/R-cran-Epi/Epi/inst/doc/ |
H A D | simLexis.R | 263 system.time( simC <- simLexis( Tr.c, globalVar 267 summary( simC, by="sex" ) 379 CoxM <- pState( nState( subset(simC,sex=="M"), 384 CoxF <- pState( nState( subset(simC,sex=="F"),
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/dports/science/R-cran-Epi/Epi/vignettes/ |
H A D | simLexis.R | 263 system.time( simC <- simLexis( Tr.c, globalVar 267 summary( simC, by="sex" ) 379 CoxM <- pState( nState( subset(simC,sex=="M"), 384 CoxF <- pState( nState( subset(simC,sex=="F"),
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H A D | simLexis.rnw | 646 system.time( simC <- simLexis( Tr.c, 650 summary( simC, by="sex" ) 789 CoxM <- pState( nState( subset(simC,sex=="M"), 794 CoxF <- pState( nState( subset(simC,sex=="F"),
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H A D | sL.tex | 970 > system.time( simC <- simLexis( Tr.c, 980 > summary( simC, by="sex" ) 1180 > CoxM <- pState( nState( subset(simC,sex=="M"), 1185 > CoxF <- pState( nState( subset(simC,sex=="F"),
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H A D | simLexis.tex | 970 > system.time( simC <- simLexis( Tr.c, 980 > summary( simC, by="sex" ) 1180 > CoxM <- pState( nState( subset(simC,sex=="M"), 1185 > CoxF <- pState( nState( subset(simC,sex=="F"),
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/dports/biology/ddocent/dDocent-2.7.8/Outdated/ |
H A D | dDocent.GATK | 137 simC=0.9 141 simC=$newC 144 simC=0.9 715 cd-hit-est -i rainbow.fasta -o reference.fasta -mask N -M 0 -T 0 -c $simC &>cdhit.log
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