Searched refs:simResults (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/checkm/CheckM-1.0.18/scripts/ |
| H A D | markerSetSelection.py | 164 def __bestMarkerSet(self, genomeId, simResults): argument
168 for uid, results in simResults[genomeId].iteritems():
180 def __workerThread(self, tree, simResults, metadata, taxonToGenomeIds, queueIn, queueOut): argument
297 def __propertiesOfBestMarkerSets(self, tree, simResults): argument
304 for genomeId in simResults:
305 bestUID, numDescendantsBest, _, _ = self.__bestMarkerSet(genomeId, simResults)
342 simResults = defaultdict(dict)
354 simResults[simId][uid] = [numDescendants, comp, cont]
360 print ' Evaluating %d test genomes.' % len(simResults)
364 for testGenomeId in simResults:
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| H A D | simCompare.py | 62 def __bestMarkerSet(self, simId, simResults): argument
64 … bestUID, numDescendantsBest, dCompBest, dContBest = self.__domainMarkerSet(simId, simResults)
66 for uid, results in simResults[simId].iteritems():
80 def __domainMarkerSet(self, simId, simResults): argument
81 if 'UID2' in simResults[simId]:
82 …return 'UID2', simResults[simId]['UID2'][0], simResults[simId]['UID2'][1], simResults[simId]['UID…
84 …return 'UID203', simResults[simId]['UID203'][0], simResults[simId]['UID203'][1], simResults[simId…
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