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Searched refs:snp2 (Results 1 – 17 of 17) sorted by relevance

/dports/devel/zpu-binutils/zpu-toolchain-1.0/toolchain/gdb/gdb/testsuite/gdb.mi/
H A Dvar-cmd.c239 snp0.ptrs[2] = &snp2; in do_children_tests()
245 snp1.ptrs[2] = &snp2; in do_children_tests()
246 snp1.next = &snp2; in do_children_tests()
247 snp2.char_ptr = &c3; in do_children_tests()
248 snp2.long_ptr = &x3; in do_children_tests()
249 snp2.ptrs[0] = &snp0; in do_children_tests()
250 snp2.ptrs[1] = &snp1; in do_children_tests()
251 snp2.ptrs[2] = &snp2; in do_children_tests()
252 snp2.next = 0x0; in do_children_tests()
256 snp2.char_ptr = &a3; in do_children_tests()
[all …]
/dports/devel/zpu-gcc/zpu-toolchain-1.0/toolchain/gdb/gdb/testsuite/gdb.mi/
H A Dvar-cmd.c239 snp0.ptrs[2] = &snp2; in do_children_tests()
245 snp1.ptrs[2] = &snp2; in do_children_tests()
246 snp1.next = &snp2; in do_children_tests()
247 snp2.char_ptr = &c3; in do_children_tests()
248 snp2.long_ptr = &x3; in do_children_tests()
249 snp2.ptrs[0] = &snp0; in do_children_tests()
250 snp2.ptrs[1] = &snp1; in do_children_tests()
251 snp2.ptrs[2] = &snp2; in do_children_tests()
252 snp2.next = 0x0; in do_children_tests()
256 snp2.char_ptr = &a3; in do_children_tests()
[all …]
/dports/biology/bolt-lmm/BOLT-LMM_v2.3.4/src/
H A DSnpInfo.cpp27 bool SnpInfo::isProximal(const SnpInfo &snp2, double genWindow) const { in isProximal() argument
28 return chrom == snp2.chrom && fabs(genpos - snp2.genpos) < genWindow; in isProximal()
30 bool SnpInfo::isProximal(const SnpInfo &snp2, int physWindow) const { in isProximal() argument
31 return chrom == snp2.chrom && abs(physpos - snp2.physpos) < physWindow; in isProximal()
H A DSnpInfo.hpp37 bool isProximal(const SnpInfo &snp2, double genWindow) const;
38 bool isProximal(const SnpInfo &snp2, int physWindow) const;
/dports/devel/avr-gdb/gdb-7.3.1/gdb/testsuite/gdb.mi/
H A Dmi-var-child.c267 snp0.ptrs[2] = &snp2; in do_children_tests()
273 snp1.ptrs[2] = &snp2; in do_children_tests()
274 snp1.next = &snp2; in do_children_tests()
275 snp2.char_ptr = &c3; in do_children_tests()
276 snp2.long_ptr = &x3; in do_children_tests()
277 snp2.ptrs[0] = &snp0; in do_children_tests()
278 snp2.ptrs[1] = &snp1; in do_children_tests()
279 snp2.ptrs[2] = &snp2; in do_children_tests()
280 snp2.next = 0x0; in do_children_tests()
284 snp2.char_ptr = &a3; in do_children_tests()
[all …]
H A Dvar-cmd.c269 snp0.ptrs[2] = &snp2; in do_children_tests()
275 snp1.ptrs[2] = &snp2; in do_children_tests()
276 snp1.next = &snp2; in do_children_tests()
277 snp2.char_ptr = &c3; in do_children_tests()
278 snp2.long_ptr = &x3; in do_children_tests()
279 snp2.ptrs[0] = &snp0; in do_children_tests()
280 snp2.ptrs[1] = &snp1; in do_children_tests()
281 snp2.ptrs[2] = &snp2; in do_children_tests()
282 snp2.next = 0x0; in do_children_tests()
286 snp2.char_ptr = &a3; in do_children_tests()
[all …]
/dports/devel/gdb761/gdb-7.6.1/gdb/testsuite/gdb.mi/
H A Dmi-var-child.c266 snp0.ptrs[2] = &snp2; in do_children_tests()
272 snp1.ptrs[2] = &snp2; in do_children_tests()
273 snp1.next = &snp2; in do_children_tests()
274 snp2.char_ptr = &c3; in do_children_tests()
275 snp2.long_ptr = &x3; in do_children_tests()
276 snp2.ptrs[0] = &snp0; in do_children_tests()
277 snp2.ptrs[1] = &snp1; in do_children_tests()
278 snp2.ptrs[2] = &snp2; in do_children_tests()
279 snp2.next = 0x0; in do_children_tests()
283 snp2.char_ptr = &a3; in do_children_tests()
[all …]
H A Dvar-cmd.c286 snp0.ptrs[2] = &snp2; in do_children_tests()
292 snp1.ptrs[2] = &snp2; in do_children_tests()
293 snp1.next = &snp2; in do_children_tests()
294 snp2.char_ptr = &c3; in do_children_tests()
295 snp2.long_ptr = &x3; in do_children_tests()
296 snp2.ptrs[0] = &snp0; in do_children_tests()
297 snp2.ptrs[1] = &snp1; in do_children_tests()
298 snp2.ptrs[2] = &snp2; in do_children_tests()
299 snp2.next = 0x0; in do_children_tests()
303 snp2.char_ptr = &a3; in do_children_tests()
[all …]
/dports/devel/gdb/gdb-11.1/gdb/testsuite/gdb.mi/
H A Dmi-var-child.c282 snp0.ptrs[2] = &snp2; in do_children_tests()
288 snp1.ptrs[2] = &snp2; in do_children_tests()
289 snp1.next = &snp2; in do_children_tests()
290 snp2.char_ptr = &c3; in do_children_tests()
291 snp2.long_ptr = &x3; in do_children_tests()
292 snp2.ptrs[0] = &snp0; in do_children_tests()
293 snp2.ptrs[1] = &snp1; in do_children_tests()
294 snp2.ptrs[2] = &snp2; in do_children_tests()
295 snp2.next = 0x0; in do_children_tests()
299 snp2.char_ptr = &a3; in do_children_tests()
[all …]
H A Dvar-cmd.c302 snp0.ptrs[2] = &snp2; in do_children_tests()
308 snp1.ptrs[2] = &snp2; in do_children_tests()
309 snp1.next = &snp2; in do_children_tests()
310 snp2.char_ptr = &c3; in do_children_tests()
311 snp2.long_ptr = &x3; in do_children_tests()
312 snp2.ptrs[0] = &snp0; in do_children_tests()
313 snp2.ptrs[1] = &snp1; in do_children_tests()
314 snp2.ptrs[2] = &snp2; in do_children_tests()
315 snp2.next = 0x0; in do_children_tests()
319 snp2.char_ptr = &a3; in do_children_tests()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/fasta/
H A DFastaAlternateReferenceMakerIntegrationTest.java16 private final File snp2 = getTestFile("snps2.vcf"); field in FastaAlternateReferenceMakerIntegrationTest
53 {snp1, snp2, getTestFile("expected_snp1_mask2.fasta"), false}, in getSnpMaskVariants()
54 {snp1, snp2, getTestFile("expected_snp1_mask2_priority.fasta"), true}, in getSnpMaskVariants()
55 {snp2, snp1, getTestFile("expected_snp2_mask1.fasta"), false}, in getSnpMaskVariants()
56 {snp2, snp1, getTestFile("expected_snp2_mask1_priority.fasta"), true}, in getSnpMaskVariants()
82 {snp2, getTestFile("expected_snp2.fasta")}, in noMask()
/dports/biology/hisat2/hisat2-2.2.1/evaluation/tests/the_small_example/
H A Dsmall.snp2 snp2 deletion small 4 1
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/objmgr/demo/
H A Dtest_all_table_annots.sh10 echo snp2 29794392
/dports/misc/py-cinder/cinder-12.0.10/cinder/tests/unit/group/
H A Dtest_groups_manager.py558 snp2 = {'id': fake.SNAPSHOT2_ID, 'name': 'snap 2',
563 snp2_obj = fake_snapshot.fake_snapshot_obj(self.context, **snp2)
942 snp2 = {'id': fake.SNAPSHOT2_ID, 'name': 'snap 2',
946 snp2_obj = fake_snapshot.fake_snapshot_obj(self.context, **snp2)
980 snp2 = {'id': fake.SNAPSHOT2_ID, 'name': 'snap 2',
984 snp2_obj = fake_snapshot.fake_snapshot_obj(self.context, **snp2)
/dports/biology/hisat2/hisat2-2.2.1/
H A Dgbwt_graph.h647 const ALT<index_t>& snp2 = alts[snpID2]; in RefGraph() local
648 assert(snp2.snp()); in RefGraph()
650 if(snp.pos > snp2.pos) { in RefGraph()
655 if(snp2.type == ALT_SNP_DEL) { in RefGraph()
656 if(snp.pos + snp.len >= snp2.pos) { in RefGraph()
667 if(snp.pos >= snp2.pos) { in RefGraph()
963 const ALT<index_t>& snp2 = alts[snpID2]; in buildGraph_worker() local
964 assert(snp2.snp()); in buildGraph_worker()
966 if(snp.pos > snp2.pos) { in buildGraph_worker()
971 if(snp2.type == ALT_SNP_DEL) { in buildGraph_worker()
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H A Dsam.h1006 const ALT<index_t>& snp2 = altdb->alts()[res.ned()[j-1].snpID]; in printAlignedOptFlags() local
1007 if(snp2.type == ALT_SNP_SGL) { in printAlignedOptFlags()
1009 } else if(snp2.type == ALT_SNP_DEL) { in printAlignedOptFlags()
1011 } else if(snp2.type == ALT_SNP_INS) { in printAlignedOptFlags()
/dports/science/clhep/2.4.1.0/CLHEP/Matrix/src/
H A DSymMatrix.cc447 HepMatrix::mcIter snp1,sp1,snp2,sp2; variable
452 snp2=hm2.m.begin();
456 sp2=snp2;
457 snp2+=step2;
482 while(sp2<snp2) {