| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/packages/spatial/sbml/ |
| H A D | ListOfCSGNodes.cpp | 84 : ListOf(spatialns) in ListOfCSGNodes()
268 delete spatialns; in createCSGPrimitive()
296 delete spatialns; in createCSGTranslation()
324 delete spatialns; in createCSGRotation()
351 csgs = new CSGScale(spatialns); in createCSGScale()
352 delete spatialns; in createCSGScale()
381 delete spatialns; in createCSGHomogeneousTransformation()
409 delete spatialns; in createCSGSetOperator()
485 object = new CSGNode(spatialns); in createObject()
509 object = new CSGScale(spatialns); in createObject()
[all …]
|
| H A D | ListOfGeometryDefinitions.cpp | 84 *spatialns) in ListOfGeometryDefinitions()
85 : ListOf(spatialns) in ListOfGeometryDefinitions()
278 delete spatialns; in createAnalyticGeometry()
307 delete spatialns; in createSampledFieldGeometry()
334 csg = new CSGeometry(spatialns); in createCSGeometry()
335 delete spatialns; in createCSGeometry()
364 delete spatialns; in createParametricGeometry()
392 mg = new MixedGeometry(spatialns); in createMixedGeometry()
393 delete spatialns; in createMixedGeometry()
487 object = new CSGeometry(spatialns); in createObject()
[all …]
|
| H A D | CSGTransformation.cpp | 87 : CSGNode(spatialns) in CSGTransformation()
93 loadPlugins(spatialns); in CSGTransformation()
237 delete spatialns; in createCSGPrimitive()
260 delete spatialns; in createCSGTranslation()
281 mCSGNode = new CSGRotation(spatialns); in createCSGRotation()
283 delete spatialns; in createCSGRotation()
304 mCSGNode = new CSGScale(spatialns); in createCSGScale()
306 delete spatialns; in createCSGScale()
330 delete spatialns; in createCSGHomogeneousTransformation()
353 delete spatialns; in createCSGSetOperator()
[all …]
|
| H A D | ListOfCoordinateComponents.cpp | 77 *spatialns) in ListOfCoordinateComponents()
78 : ListOf(spatialns) in ListOfCoordinateComponents()
80 setElementNamespace(spatialns->getURI()); in ListOfCoordinateComponents()
271 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createCoordinateComponent()
272 cc = new CoordinateComponent(spatialns); in createCoordinateComponent()
273 delete spatialns; in createCoordinateComponent()
331 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
335 object = new CoordinateComponent(spatialns); in createObject()
339 delete spatialns; in createObject()
|
| H A D | ListOfDomainTypes.cpp | 75 ListOfDomainTypes::ListOfDomainTypes(SpatialPkgNamespaces *spatialns) in ListOfDomainTypes() argument
76 : ListOf(spatialns) in ListOfDomainTypes()
78 setElementNamespace(spatialns->getURI()); in ListOfDomainTypes()
256 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createDomainType()
257 dt = new DomainType(spatialns); in createDomainType()
258 delete spatialns; in createDomainType()
316 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
320 object = new DomainType(spatialns); in createObject()
324 delete spatialns; in createObject()
|
| H A D | ListOfInteriorPoints.cpp | 76 ListOfInteriorPoints::ListOfInteriorPoints(SpatialPkgNamespaces *spatialns) in ListOfInteriorPoints() argument
77 : ListOf(spatialns) in ListOfInteriorPoints()
79 setElementNamespace(spatialns->getURI()); in ListOfInteriorPoints()
257 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createInteriorPoint()
258 ip = new InteriorPoint(spatialns); in createInteriorPoint()
259 delete spatialns; in createInteriorPoint()
317 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
321 object = new InteriorPoint(spatialns); in createObject()
325 delete spatialns; in createObject()
|
| H A D | ListOfSampledFields.cpp | 76 ListOfSampledFields::ListOfSampledFields(SpatialPkgNamespaces *spatialns) in ListOfSampledFields() argument
77 : ListOf(spatialns) in ListOfSampledFields()
79 setElementNamespace(spatialns->getURI()); in ListOfSampledFields()
257 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createSampledField()
258 sf = new SampledField(spatialns); in createSampledField()
259 delete spatialns; in createSampledField()
317 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
321 object = new SampledField(spatialns); in createObject()
325 delete spatialns; in createObject()
|
| H A D | MixedGeometry.cpp | 86 : GeometryDefinition(spatialns) in MixedGeometry()
87 , mGeometryDefinitions (spatialns) in MixedGeometry()
88 , mOrdinalMappings (spatialns) in MixedGeometry()
92 loadPlugins(spatialns); in MixedGeometry()
265 delete spatialns; in createAnalyticGeometry()
293 delete spatialns; in createSampledFieldGeometry()
320 csg = new CSGeometry(spatialns); in createCSGeometry()
321 delete spatialns; in createCSGeometry()
349 delete spatialns; in createParametricGeometry()
377 delete spatialns; in createMixedGeometry()
[all …]
|
| H A D | CSGObject.cpp | 90 : SBase(spatialns) in CSGObject()
98 loadPlugins(spatialns); in CSGObject()
454 delete spatialns; in createCSGPrimitive()
477 delete spatialns; in createCSGTranslation()
498 mCSGNode = new CSGRotation(spatialns); in createCSGRotation()
500 delete spatialns; in createCSGRotation()
521 mCSGNode = new CSGScale(spatialns); in createCSGScale()
523 delete spatialns; in createCSGScale()
546 delete spatialns; in createCSGHomogeneousTransformation()
569 delete spatialns; in createCSGSetOperator()
[all …]
|
| H A D | ListOfAnalyticVolumes.cpp | 77 ListOfAnalyticVolumes::ListOfAnalyticVolumes(SpatialPkgNamespaces *spatialns) in ListOfAnalyticVolumes() argument
78 : ListOf(spatialns) in ListOfAnalyticVolumes()
80 setElementNamespace(spatialns->getURI()); in ListOfAnalyticVolumes()
264 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createAnalyticVolume()
265 av = new AnalyticVolume(spatialns); in createAnalyticVolume()
266 delete spatialns; in createAnalyticVolume()
366 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
370 object = new AnalyticVolume(spatialns); in createObject()
374 delete spatialns; in createObject()
|
| H A D | ListOfCSGObjects.cpp | 75 ListOfCSGObjects::ListOfCSGObjects(SpatialPkgNamespaces *spatialns) in ListOfCSGObjects() argument
76 : ListOf(spatialns) in ListOfCSGObjects()
78 setElementNamespace(spatialns->getURI()); in ListOfCSGObjects()
260 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createCSGObject()
261 csgo = new CSGObject(spatialns); in createCSGObject()
262 delete spatialns; in createCSGObject()
362 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
366 object = new CSGObject(spatialns); in createObject()
370 delete spatialns; in createObject()
|
| H A D | ListOfDomains.cpp | 75 ListOfDomains::ListOfDomains(SpatialPkgNamespaces *spatialns) in ListOfDomains() argument
76 : ListOf(spatialns) in ListOfDomains()
78 setElementNamespace(spatialns->getURI()); in ListOfDomains()
258 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createDomain()
259 d = new Domain(spatialns); in createDomain()
260 delete spatialns; in createDomain()
358 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
362 object = new Domain(spatialns); in createObject()
366 delete spatialns; in createObject()
|
| H A D | ListOfOrdinalMappings.cpp | 76 ListOfOrdinalMappings::ListOfOrdinalMappings(SpatialPkgNamespaces *spatialns) in ListOfOrdinalMappings() argument
77 : ListOf(spatialns) in ListOfOrdinalMappings()
79 setElementNamespace(spatialns->getURI()); in ListOfOrdinalMappings()
259 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createOrdinalMapping()
260 om = new OrdinalMapping(spatialns); in createOrdinalMapping()
261 delete spatialns; in createOrdinalMapping()
361 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
365 object = new OrdinalMapping(spatialns); in createObject()
369 delete spatialns; in createObject()
|
| H A D | ListOfParametricObjects.cpp | 77 *spatialns) in ListOfParametricObjects()
78 : ListOf(spatialns) in ListOfParametricObjects()
80 setElementNamespace(spatialns->getURI()); in ListOfParametricObjects()
262 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createParametricObject()
263 po = new ParametricObject(spatialns); in createParametricObject()
264 delete spatialns; in createParametricObject()
364 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
368 object = new ParametricObject(spatialns); in createObject()
372 delete spatialns; in createObject()
|
| H A D | ListOfSampledVolumes.cpp | 76 ListOfSampledVolumes::ListOfSampledVolumes(SpatialPkgNamespaces *spatialns) in ListOfSampledVolumes() argument
77 : ListOf(spatialns) in ListOfSampledVolumes()
79 setElementNamespace(spatialns->getURI()); in ListOfSampledVolumes()
257 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createSampledVolume()
258 sv = new SampledVolume(spatialns); in createSampledVolume()
259 delete spatialns; in createSampledVolume()
359 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
363 object = new SampledVolume(spatialns); in createObject()
367 delete spatialns; in createObject()
|
| H A D | ListOfAdjacentDomains.cpp | 76 ListOfAdjacentDomains::ListOfAdjacentDomains(SpatialPkgNamespaces *spatialns) in ListOfAdjacentDomains() argument
77 : ListOf(spatialns) in ListOfAdjacentDomains()
79 setElementNamespace(spatialns->getURI()); in ListOfAdjacentDomains()
259 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createAdjacentDomains()
260 ad = new AdjacentDomains(spatialns); in createAdjacentDomains()
261 delete spatialns; in createAdjacentDomains()
403 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
407 object = new AdjacentDomains(spatialns); in createObject()
411 delete spatialns; in createObject()
|
| H A D | CSGSetOperator.cpp | 89 : CSGNode(spatialns) in CSGSetOperator()
93 , mCSGNodes (spatialns) in CSGSetOperator()
97 loadPlugins(spatialns); in CSGSetOperator()
468 delete spatialns; in createCSGPrimitive()
496 delete spatialns; in createCSGTranslation()
523 csgr = new CSGRotation(spatialns); in createCSGRotation()
524 delete spatialns; in createCSGRotation()
551 csgs = new CSGScale(spatialns); in createCSGScale()
552 delete spatialns; in createCSGScale()
581 delete spatialns; in createCSGHomogeneousTransformation()
[all …]
|
| H A D | Geometry.cpp | 91 : SBase(spatialns) in Geometry()
95 , mDomains (spatialns) in Geometry()
417 delete spatialns; in createCoordinateComponent()
575 delete spatialns; in createDomainType()
756 delete spatialns; in createDomain()
957 delete spatialns; in createAdjacentDomains()
1116 delete spatialns; in createAnalyticGeometry()
1144 delete spatialns; in createSampledFieldGeometry()
1172 delete spatialns; in createCSGeometry()
1200 delete spatialns; in createParametricGeometry()
[all …]
|
| H A D | ParametricGeometry.cpp | 81 : GeometryDefinition(spatialns) in ParametricGeometry()
83 , mParametricObjects (spatialns) in ParametricGeometry()
85 setElementNamespace(spatialns->getURI()); in ParametricGeometry()
87 loadPlugins(spatialns); in ParametricGeometry()
228 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createSpatialPoints()
229 mSpatialPoints = new SpatialPoints(spatialns); in createSpatialPoints()
231 delete spatialns; in createSpatialPoints()
394 po = new ParametricObject(spatialns); in createParametricObject()
395 delete spatialns; in createParametricObject()
1102 mSpatialPoints = new SpatialPoints(spatialns); in createObject()
[all …]
|
| H A D | CSGHomogeneousTransformation.cpp | 82 *spatialns) in CSGHomogeneousTransformation()
83 : CSGTransformation(spatialns) in CSGHomogeneousTransformation()
86 setElementNamespace(spatialns->getURI()); in CSGHomogeneousTransformation()
88 loadPlugins(spatialns); in CSGHomogeneousTransformation()
236 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createForwardTransformation()
237 mForwardTransformation = new TransformationComponent(spatialns); in createForwardTransformation()
241 delete spatialns; in createForwardTransformation()
883 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
896 mForwardTransformation = new TransformationComponent(spatialns); in createObject()
901 delete spatialns; in createObject()
|
| H A D | CoordinateComponent.cpp | 84 : SBase(spatialns) in CoordinateComponent()
90 setElementNamespace(spatialns->getURI()); in CoordinateComponent()
92 loadPlugins(spatialns); in CoordinateComponent()
555 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createBoundaryMin()
556 mBoundaryMin = new Boundary(spatialns); in createBoundaryMin()
560 delete spatialns; in createBoundaryMin()
581 mBoundaryMax = new Boundary(spatialns); in createBoundaryMax()
585 delete spatialns; in createBoundaryMax()
1427 mBoundaryMin = new Boundary(spatialns); in createObject()
1442 mBoundaryMax = new Boundary(spatialns); in createObject()
[all …]
|
| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/packages/spatial/extension/ |
| H A D | SpatialParameterPlugin.cpp | 67 : SBasePlugin(uri, prefix, spatialns) in SpatialParameterPlugin()
495 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createSpatialSymbolReference()
500 delete spatialns; in createSpatialSymbolReference()
521 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createAdvectionCoefficient()
526 delete spatialns; in createAdvectionCoefficient()
547 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createBoundaryCondition()
552 delete spatialns; in createBoundaryCondition()
573 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createDiffusionCoefficient()
578 delete spatialns; in createDiffusionCoefficient()
1508 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
[all …]
|
| H A D | SpatialCompartmentPlugin.cpp | 67 spatialns) in SpatialCompartmentPlugin() argument
68 : SBasePlugin(uri, prefix, spatialns) in SpatialCompartmentPlugin()
224 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createCompartmentMapping()
225 mCompartmentMapping = new CompartmentMapping(spatialns); in createCompartmentMapping()
229 delete spatialns; in createCompartmentMapping()
869 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
884 mCompartmentMapping = new CompartmentMapping(spatialns); in createObject()
889 delete spatialns; in createObject()
|
| H A D | SpatialModelPlugin.cpp | 64 SpatialPkgNamespaces* spatialns) in SpatialModelPlugin() argument
65 : SBasePlugin(uri, prefix, spatialns) in SpatialModelPlugin()
214 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createGeometry()
215 mGeometry = new Geometry(spatialns); in createGeometry()
219 delete spatialns; in createGeometry()
843 SPATIAL_CREATE_NS(spatialns, getSBMLNamespaces()); in createObject()
857 mGeometry = new Geometry(spatialns); in createObject()
862 delete spatialns; in createObject()
|
| /dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/src/sbml/packages/spatial/extension/test/ |
| H A D | TestSpatialExtension.cpp | 99 SpatialPkgNamespaces *spatialns; in START_TEST() local
100 …spatialns = static_cast<SpatialPkgNamespaces*>(S->getSBMLExtensionNamespaces(SPATIAL_XMLNS_L3V1V1)… in START_TEST()
102 fail_unless(spatialns->getLevel() == 3); in START_TEST()
103 fail_unless(spatialns->getVersion() == 1); in START_TEST()
104 fail_unless(spatialns->getPackageVersion() == 1); in START_TEST()
106 delete spatialns; in START_TEST()
107 spatialns = static_cast<SpatialPkgNamespaces*>(S->getSBMLExtensionNamespaces("")); in START_TEST()
109 fail_unless(spatialns == NULL); in START_TEST()
|