/dports/biology/emboss/EMBOSS-6.6.0/emboss/data/TAXONOMY/ |
H A D | nodes.dmp | 4 7 | 6 | species | AC | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 5 9 | 32199 | species | BA | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 7 11 | 1707 | species | CG | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 9 14 | 13 | species | DT | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 11 17 | 16 | species | MM | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 13 19 | 18 | species | PC | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 15 21 | 20 | species | PI | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 17 23 | 22 | species | SC | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 18 24 | 22 | species | SP | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | 19 25 | 22 | species | SH | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | [all …]
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/dports/science/py-abipy/abipy-0.9.0/abipy/test_files/ |
H A D | Si_tdep.ssposcar | 9 0.05000000000000 0.05000000000000 0.05000000000000 site 1 species 1: Si 10 0.05000000000000 0.05000000000000 0.25000000000000 site 2 species 1: Si 11 0.05000000000000 0.05000000000000 0.45000000000000 site 3 species 1: Si 12 0.05000000000000 0.05000000000000 0.65000000000000 site 4 species 1: Si 13 0.05000000000000 0.05000000000000 0.85000000000000 site 5 species 1: Si 14 0.05000000000000 0.25000000000000 0.05000000000000 site 6 species 1: Si 15 0.05000000000000 0.25000000000000 0.25000000000000 site 7 species 1: Si 16 0.05000000000000 0.25000000000000 0.45000000000000 site 8 species 1: Si 17 0.05000000000000 0.25000000000000 0.65000000000000 site 9 species 1: Si 18 0.05000000000000 0.25000000000000 0.85000000000000 site 10 species 1: Si [all …]
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/dports/science/elk/elk-7.2.42/species/ |
H A D | elk.in | 9 species 17 species 25 species 34 species 43 species 53 species 64 species 75 species 86 species 97 species [all …]
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/dports/science/lammps/lammps-stable_29Sep2021/src/KIM/ |
H A D | kim_interactions.cpp | 316 if (((species[ia] == words[0]) && (species[ib] == words[1])) in KIM_SET_TYPE_PARAMETERS() 317 || ((species[ib] == words[0]) && (species[ia] == words[1]))) in KIM_SET_TYPE_PARAMETERS() 323 if (species[ia] == words[0]) in KIM_SET_TYPE_PARAMETERS() 333 if (species == "H") return 1; in species_to_atomic_no() 334 else if (species == "He") return 2; in species_to_atomic_no() 335 else if (species == "Li") return 3; in species_to_atomic_no() 337 else if (species == "B") return 5; in species_to_atomic_no() 338 else if (species == "C") return 6; in species_to_atomic_no() 339 else if (species == "N") return 7; in species_to_atomic_no() 340 else if (species == "O") return 8; in species_to_atomic_no() [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/taxdump/ |
H A D | nodes.dmp | 4 9606 | 9605 | species | HS | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 25 27591 | 9933 | species | GG | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 27 27596 | 9918 | species | BD | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 28 27598 | 9859 | species | CS | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 38 60720 | 44402 | species | NA | 1 | 1 | 1 | 1 | 5 | 1 | 1 | 0 | | 39 60721 | 44402 | species | NB | 1 | 1 | 1 | 1 | 5 | 1 | 1 | 0 | | 48 77110 | 4415 | species | NU | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | | 49 77111 | 4415 | species | NO | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | | 50 77112 | 4415 | species | NS | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | | 51 77113 | 4415 | species | NL | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | | [all …]
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/dports/games/nazghul/nazghul-0.7.1/src/ |
H A D | species.c | 59 struct species *species = (struct species *)malloc(sizeof(*species)); in species_new() local 60 assert(species); in species_new() 61 memset(species, 0, sizeof(*species)); in species_new() 99 void species_del(struct species *species) in species_del() argument 101 if (!species) in species_del() 103 if (species->tag) in species_del() 104 free(species->tag); in species_del() 105 if (species->name) in species_del() 106 free(species->name); in species_del() 107 if (species->slots) in species_del() [all …]
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/dports/games/stonesoup/crawl-0.27.1/crawl-ref/source/ |
H A D | species.cc | 35 namespace species namespace 144 species = in random_draconian_colour() 150 return species; in random_draconian_colour() 172 switch (species) in scale_type() 289 return species == SP_GARGOYLE || species == SP_DJINNI; in is_nonliving() 385 if (is_draconian(species) || species == SP_NAGA) in skin_name() 554 return get_species_def(species).d >= get_species_def(species).s; in has_low_str() 579 return 0 <= species && species < NUM_SPECIES; in is_valid() 595 return species[random2(species.size())]; in random_starting_species() 641 species::name(species) + " growth"); in give_level_mutations() [all …]
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H A D | species.h | 19 namespace species 35 bool is_elven(species_type species); 36 bool is_orcish(species_type species); 37 bool is_undead(species_type species); 38 bool is_draconian(species_type species); 49 bool has_hair(species_type species); 50 bool has_bones(species_type species); 53 bool has_claws(species_type species); 55 bool can_swim(species_type species); 65 int arm_count(species_type species); [all …]
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H A D | ng-restr.cc | 22 if (species::mutation_level(species, MUT_NO_GRASPING) in _banned_combination() 31 if (species::mutation_level(species, MUT_FORLORN) in _banned_combination() 40 if (job == JOB_TRANSMUTER && species::undead_type(species) == US_UNDEAD) in _banned_combination() 62 return !_banned_combination(job, species); in character_is_allowed() 73 if (species::recommends_job(speci, job)) in job_allowed() 84 ASSERT(species::is_starting_species(ng.species)); in weapon_restriction() 89 if (species::mutation_level(ng.species, MUT_NO_GRASPING) && wpn != WPN_UNARMED) in weapon_restriction() 94 if ((ng.species == SP_NAGA || ng.species == SP_VAMPIRE) in weapon_restriction() 103 && species::mutation_level(ng.species, MUT_QUADRUMANOUS))) in weapon_restriction() 111 return species::size(ng.species) >= SIZE_MEDIUM ? CC_UNRESTRICTED in weapon_restriction() [all …]
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H A D | playable.cc | 25 return string(species::get_abbrev(species)) + get_job_abbrev(job); in abbr() 51 auto species = species::get_all_species(); in playable_species() local 54 return species; in playable_species() 129 json_append_member(species, "name", json_mkstring(species::name(sp))); in _species_metadata() 130 json_append_member(species, "abbr", json_mkstring(species::get_abbrev(sp))); in _species_metadata() 140 return species; in _species_metadata() 145 JsonNode *species(json_mkarray()); in _species_metadata_array() local 152 return species; in _species_metadata_array() 157 JsonNode *species(json_mkarray()); in _job_recommended_species() local 159 json_append_element(species, json_mkstring(species::name(sp))); in _job_recommended_species() [all …]
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/dports/games/fs2open/fs2open.github.com-release_21_4_1/code/species_defs/ |
H A D | species_defs.cpp | 182 species = &new_species; in parse_species_tbl() 194 species = &Species_info[i]; in parse_species_tbl() 213 species->default_iff = iLoop; in parse_species_tbl() 220 species->default_iff = 0; in parse_species_tbl() 227 species->default_iff = 0; in parse_species_tbl() 243 species->fred_color.rgb.r = 0; in parse_species_tbl() 244 species->fred_color.rgb.g = 0; in parse_species_tbl() 249 species->fred_color.rgb.r = 0; in parse_species_tbl() 251 species->fred_color.rgb.b = 0; in parse_species_tbl() 256 species->fred_color.rgb.g = 0; in parse_species_tbl() [all …]
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/dports/games/diaspora/Diaspora_R1_Linux/Diaspora/fs2_open/code/species_defs/ |
H A D | species_defs.cpp | 193 species = &new_species; in parse_species_tbl() 207 species = &Species_info[i]; in parse_species_tbl() 229 species->default_iff = iLoop; in parse_species_tbl() 236 species->default_iff = 0; in parse_species_tbl() 243 species->default_iff = 0; in parse_species_tbl() 259 species->fred_color.rgb.r = 0; in parse_species_tbl() 260 species->fred_color.rgb.g = 0; in parse_species_tbl() 265 species->fred_color.rgb.r = 0; in parse_species_tbl() 267 species->fred_color.rgb.b = 0; in parse_species_tbl() 272 species->fred_color.rgb.g = 0; in parse_species_tbl() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/csharp/fbc/ |
H A D | fbc_example1.cs | 68 species.setId("Node1"); in Main() 70 species.setConstant(false); in Main() 75 species.setId("Node2"); in Main() 84 species.setId("Node3"); in Main() 91 species.setId("Node4"); in Main() 98 species.setId("Node5"); in Main() 105 species.setId("Node6"); in Main() 112 species.setId("Node7"); in Main() 119 species.setId("Node8"); in Main() 126 species.setId("Node0"); in Main() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/java/fbc/ |
H A D | fbc_example1.java | 69 species.setId("Node1"); in main() 71 species.setConstant(false); in main() 76 species.setId("Node2"); in main() 85 species.setId("Node3"); in main() 92 species.setId("Node4"); in main() 99 species.setId("Node5"); in main() 106 species.setId("Node6"); in main() 113 species.setId("Node7"); in main() 120 species.setId("Node8"); in main() 127 species.setId("Node0"); in main() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/c++/dyn/ |
H A D | dyn_example1.cpp | 84 species->setId("C_EC"); in main() 87 species->setConstant(false); in main() 91 species->setId("RTR_M"); in main() 94 species->setConstant(false); in main() 98 species->setId("RCC_M"); in main() 101 species->setConstant(false); in main() 105 species->setId("A_C"); in main() 108 species->setConstant(false); in main() 112 species->setId("AA_C"); in main() 119 species->setId("T"); in main() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/c++/fbc/ |
H A D | fbc_example1.cpp | 69 species->setId("Node1"); in main() 72 species->setConstant(false); in main() 76 species->setId("Node2"); in main() 83 species->setId("Node3"); in main() 90 species->setId("Node4"); in main() 97 species->setId("Node5"); in main() 104 species->setId("Node6"); in main() 111 species->setId("Node7"); in main() 118 species->setId("Node8"); in main() 125 species->setId("Node0"); in main() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/perl/fbc/ |
H A D | example1.pl | 63 $species->setId("Node1"); 66 $species->setConstant(0); 70 $species->setId("Node2"); 73 $species->setConstant(0); 77 $species->setId("Node3"); 80 $species->setConstant(0); 84 $species->setId("Node4"); 87 $species->setConstant(0); 91 $species->setId("Node5"); 94 $species->setConstant(0); [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/ruby/fbc/ |
H A D | example1.rb | 69 species.setId("Node1"); 72 species.setConstant(false); 76 species.setId("Node2"); 83 species.setId("Node3"); 90 species.setId("Node4"); 97 species.setId("Node5"); 104 species.setId("Node6"); 111 species.setId("Node7"); 118 species.setId("Node8"); 125 species.setId("Node0"); [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/c/fbc/ |
H A D | fbc_example1.c | 67 Species_t * species; in main() local 109 Species_setId(species, "Node1"); in main() 112 Species_setConstant(species, 0); in main() 116 Species_setId(species, "Node2"); in main() 119 Species_setConstant(species, 0); in main() 123 Species_setId(species, "Node3"); in main() 126 Species_setConstant(species, 0); in main() 130 Species_setId(species, "Node4"); in main() 133 Species_setConstant(species, 0); in main() 137 Species_setId(species, "Node5"); in main() [all …]
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H A D | fbc_example1_v2.c | 67 Species_t * species; in main() local 131 Species_setId(species, "Node1"); in main() 134 Species_setConstant(species, 0); in main() 138 Species_setId(species, "Node2"); in main() 141 Species_setConstant(species, 0); in main() 145 Species_setId(species, "Node3"); in main() 148 Species_setConstant(species, 0); in main() 152 Species_setId(species, "Node4"); in main() 155 Species_setConstant(species, 0); in main() 159 Species_setId(species, "Node5"); in main() [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/python/fbc/ |
H A D | fbc_example1.py | 67 species.setId("Node1") 70 species.setConstant(False) 83 species.setId("Node2") 90 species.setId("Node3") 97 species.setId("Node4") 104 species.setId("Node5") 111 species.setId("Node6") 118 species.setId("Node7") 125 species.setId("Node8") 132 species.setId("Node0") [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_source/examples/python/dyn/ |
H A D | dyn_example1.py | 77 species = model.createSpecies(); variable 78 species.setId("C_EC"); 81 species.setConstant(False); 85 species.setId("RTR_M"); 88 species.setConstant(False); 92 species.setId("RCC_M"); 95 species.setConstant(False); 99 species.setId("A_C"); 102 species.setConstant(False); 106 species.setId("AA_C"); [all …]
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/dports/devel/p5-Class-AutoClass/Class-AutoClass-1.56/t/ |
H A D | autoclass.011.class_attributes.t | 18 is($parent2->species, 'human'); 19 $parent1->species('canine'); 21 is($parent2->species, 'canine'); 27 is($child1->species, 'Dipodomys gravipes','Child declares but does not set species'); 33 is($parent1->species, 'canine'); 34 is($parent2->species, 'canine'); 40 is($parent1->species, 'canine'); 41 is($parent2->species, 'canine'); 46 is($gchild1->species, 'schmoo'); 48 $gchild2->species('fudd'); [all …]
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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/data/taxdump/ |
H A D | nodes.dmp | 35 9579 | 9578 | species | HA | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 36 9580 | 9578 | species | HL | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 37 9581 | 9578 | species | HS | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 39 9587 | 9578 | species | HK | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 40 9588 | 9578 | species | HM | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 41 9589 | 9578 | species | HP | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 44 9593 | 9592 | species | GG | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 48 9597 | 9596 | species | PP | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 49 9598 | 9596 | species | PT | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | 51 9600 | 9599 | species | PP | 5 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | | [all …]
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/dports/biology/py-biopython/biopython-1.79/Bio/Pathway/ |
H A D | __init__.py | 99 t = tuple(self.species()) 116 for species in all_species: 146 def species(self): member in Reaction 196 def species(self): member in System 219 species = self.species() 269 def __init__(self, species=()): argument 280 len(self.species()), 284 def add_species(self, species): argument 292 def source(self, species): argument 300 def sink(self, species): argument [all …]
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