| /dports/deskutils/treeline/TreeLine/source/ |
| H A D | recentfiles.py | 94 self.scrollPos = topSpot.spotId() if topSpot else ''
95 self.selectSpots = [spot.spotId() for spot in
97 self.openSpots = [spot.spotId() for spot in localControl.structure.
113 for spotId in self.openSpots:
114 treeView.expandSpot(localControl.structure.spotById(spotId))
120 spotById(spotId) for
121 spotId in
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| H A D | treestructure.py | 184 def spotById(self, spotId): argument
191 nodeId, spotNum = spotId.split(':', 1)
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| H A D | treespot.py | 60 def spotId(self): member in TreeSpot
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/ |
| H A D | alignment-writer.c | 162 rc_t AlignmentWriteSpotId(Alignment * const self, int64_t const spotId) in AlignmentWriteSpotId() argument
166 return TableWriterAlgn_Write_SpotId(self->tbl[tblPrimary], self->rowId, spotId); in AlignmentWriteSpotId()
168 return TableWriterAlgn_Write_SpotId(self->tbl[tblSecondary], self->rowId, spotId); in AlignmentWriteSpotId()
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| H A D | loader-imp.c | 116 uint32_t spotId; member
172 int64_t spotId; member
686 int64_t const save3 = ctx->spotId; in SetupContext()
691 ctx->spotId = save3; in SetupContext()
2272 bool const spotHasBeenWritten = (spotId != 0); in ProcessBAM()
2542 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); in ProcessBAM()
2795 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); in WriteSoloFragments()
2812 for (row = 1; row <= ctx->spotId; ++row) { in SequenceUpdateAlignInfo()
2888 int64_t const spotId = CTX_VALUE_GET_S_ID(*value); in AlignmentUpdateSpotInfo() local
2890 if (spotId == 0) { in AlignmentUpdateSpotInfo()
[all …]
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| H A D | alignment-writer.h | 95 rc_t AlignmentWriteSpotId(Alignment *self, int64_t spotId);
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/ |
| H A D | alignment-writer.c | 173 rc_t AlignmentUpdateInfo(AlignmentWriter * const self, int64_t const spotId, int64_t const mateId, … in AlignmentUpdateInfo() argument
177 …return TableWriterAlgn_Write_SpotInfo(self->tbl[tblPrimary], self->rowId, spotId, mateId, mateRefP… in AlignmentUpdateInfo()
179 return TableWriterAlgn_Write_SpotInfo(self->tbl[tblSecondary], self->rowId, spotId, 0, 0); in AlignmentUpdateInfo()
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| H A D | common-writer.c | 61 uint32_t spotId; member
78 #define CTX_VALUE_SET_S_ID(O,V) do { int64_t tv = (V); (O).spotId = (uint32_t)tv; (O).spotId_ext = …
79 #define CTX_VALUE_GET_S_ID(O) ((((int64_t)(O).spotId_ext) << 32) | (O).spotId)
578 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); in WriteSoloFragments()
613 int64_t const spotId = CTX_VALUE_GET_S_ID(*value); in AlignmentUpdateSpotInfo() local
622 if (spotId == 0) { in AlignmentUpdateSpotInfo()
636 rc = AlignmentUpdateInfo(align, spotId, mateId, &mateGlobalRefPos); in AlignmentUpdateSpotInfo()
651 KLoadProgressbar_Append(ctx->progress[ctx->pass - 1], ctx->spotId + 1); in SequenceUpdateAlignInfo()
653 for (row = 1; row <= ctx->spotId; ++row) { in SequenceUpdateAlignInfo()
1746 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); in ArchiveFile()
[all …]
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/loader/ |
| H A D | alignment-writer.c | 173 rc_t AlignmentUpdateInfo(AlignmentWriter * const self, int64_t const spotId, int64_t const mateId, … in AlignmentUpdateInfo() argument
177 …return TableWriterAlgn_Write_SpotInfo(self->tbl[tblPrimary], self->rowId, spotId, mateId, mateRefP… in AlignmentUpdateInfo()
179 return TableWriterAlgn_Write_SpotInfo(self->tbl[tblSecondary], self->rowId, spotId, 0, 0); in AlignmentUpdateInfo()
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| H A D | common-writer.c | 61 uint32_t spotId; member
78 #define CTX_VALUE_SET_S_ID(O,V) do { int64_t tv = (V); (O).spotId = (uint32_t)tv; (O).spotId_ext = …
79 #define CTX_VALUE_GET_S_ID(O) ((((int64_t)(O).spotId_ext) << 32) | (O).spotId)
578 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); in WriteSoloFragments()
613 int64_t const spotId = CTX_VALUE_GET_S_ID(*value); in AlignmentUpdateSpotInfo() local
622 if (spotId == 0) { in AlignmentUpdateSpotInfo()
636 rc = AlignmentUpdateInfo(align, spotId, mateId, &mateGlobalRefPos); in AlignmentUpdateSpotInfo()
651 KLoadProgressbar_Append(ctx->progress[ctx->pass - 1], ctx->spotId + 1); in SequenceUpdateAlignInfo()
653 for (row = 1; row <= ctx->spotId; ++row) { in SequenceUpdateAlignInfo()
1746 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); in ArchiveFile()
[all …]
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/ |
| H A D | spot-assembler.h | 86 int64_t spotId; member
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| H A D | spot-assembler.c | 521 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); in SpotAssemblerWriteSoloFragments()
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| H A D | common-writer.c | 1011 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); //AB in ArchiveFile()
1064 CTX_VALUE_SET_S_ID(*value, ++ctx->spotId); //AB in ArchiveFile()
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/loader/ |
| H A D | common-writer.h | 141 int64_t spotId; member
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| H A D | alignment-writer.h | 98 rc_t AlignmentUpdateInfo(AlignmentWriter *const self, int64_t const spotId,
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/loader/ |
| H A D | common-writer.h | 141 int64_t spotId; member
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| H A D | alignment-writer.h | 98 rc_t AlignmentUpdateInfo(AlignmentWriter *const self, int64_t const spotId,
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/ |
| H A D | fastq.c | 261 spotid_t* spotId, const char* spot_name, size_t spotname_sz, in Defline_Bind() argument
275 data->values[ DefNode_SpotId ].id = spotId; in Defline_Bind()
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