sqrt_dp_ra (reference) in projects: dports

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Searched refs:sqrt_dp_ra (Results 1 – 6 of 6) sorted by relevance

/dports/biology/vt/vt-0.57721/
H A D	vntr_genotyping_record.cpp	334 float sqrt_dp_ra = sqrt((float)tmp_dp_ra); in flush_sample() local 352 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample() 353 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample() 354 …float cyr = sqrt_dp_ra * Estimator::compute_correlation_f( tmp_dp_ra, tmp_cy_al, tmp_cy_s1, tmp_cy… in flush_sample() 355 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample() 356 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
H A D	snp_genotyping_record.cpp	337 float sqrt_dp_ra = sqrt((float)tmp_dp_ra); in flush_sample() local 355 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample() 356 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample() 357 …float cyr = sqrt_dp_ra * Estimator::compute_correlation_f( tmp_dp_ra, tmp_cy_al, tmp_cy_s1, tmp_cy… in flush_sample() 358 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample() 359 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
H A D	indel_genotyping_record.cpp	350 float sqrt_dp_ra = sqrt((float)tmp_dp_ra); in flush_sample() local 368 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample() 369 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample() 370 …float cyr = sqrt_dp_ra * Estimator::compute_correlation_f( tmp_dp_ra, tmp_cy_al, tmp_cy_s1, tmp_cy… in flush_sample() 371 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample() 372 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
H A D	complex_genotyping_record.cpp	386 float sqrt_dp_ra = sqrt((float)tmp_dp_ra); in flush_sample() local 404 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample() 405 …float mqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_mq_al, tmp_mq_s1, tmp_mq_s… in flush_sample() 406 …float cyr = sqrt_dp_ra * Estimator::compute_correlation_f( tmp_dp_ra, tmp_cy_al, tmp_cy_s1, tmp_cy… in flush_sample() 407 …float str = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_st_al, tmp_st_s1, tmp_st_s… in flush_sample() 408 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
H A D	paste_and_compute_features_sequential.cpp	535 float sqrt_dp_ra = sqrt((float)dp_ra); in paste_and_compute_features_sequential() local 552 … float bqr = sqrt_dp_ra * compute_correlation( dp_ra, bq_al, bq_s1, bq_s2, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential() 553 … float mqr = sqrt_dp_ra * compute_correlation( dp_ra, mq_al, mq_s1, mq_s2, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential() 554 …float cyr = sqrt_dp_ra * compute_correlation_f( dp_ra, cy_al, cy_s1, cy_s2, (float)al_s1, (float)a… in paste_and_compute_features_sequential() 555 … float str = sqrt_dp_ra * compute_correlation( dp_ra, st_al, st_s1, st_s1, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential() 556 … float nmr = sqrt_dp_ra * compute_correlation( dp_ra, nm_al, nm_s1, nm_s2, al_s1, al_s1, .1 ); in paste_and_compute_features_sequential()
H A D	paste_genotypes.cpp	555 float sqrt_dp_ra = sqrt((float)dp_ra); in paste_genotypes() local 572 … float bqr = sqrt_dp_ra * compute_correlation( dp_ra, bq_al, bq_s1, bq_s2, al_s1, al_s1, .1 ); in paste_genotypes() 573 … float mqr = sqrt_dp_ra * compute_correlation( dp_ra, mq_al, mq_s1, mq_s2, al_s1, al_s1, .1 ); in paste_genotypes() 574 …float cyr = sqrt_dp_ra * compute_correlation_f( dp_ra, cy_al, cy_s1, cy_s2, (float)al_s1, (float)a… in paste_genotypes() 575 … float str = sqrt_dp_ra * compute_correlation( dp_ra, st_al, st_s1, st_s1, al_s1, al_s1, .1 ); in paste_genotypes() 576 … float nmr = sqrt_dp_ra * compute_correlation( dp_ra, nm_al, nm_s1, nm_s2, al_s1, al_s1, .1 ); in paste_genotypes()