Searched refs:sra_accs (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | pat.h | 1025 const EList<string>& sra_accs, // SRA accessions
1324 const EList<string>& sra_accs, in SRAPatternSource() argument
1327 sra_accs_(sra_accs), in SRAPatternSource()
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| H A D | pat.cpp | 295 const EList<string>& sra_accs, // SRA accessions in setupPatternComposer() argument
322 for(size_t i = 0; i < sra_accs.size(); i++) { in setupPatternComposer()
323 const EList<string>* qs = &sra_accs; in setupPatternComposer()
328 tmp.push_back(sra_accs[i]); in setupPatternComposer()
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| H A D | bt2_search.cpp | 264 static EList<string> sra_accs; variable
463 sra_accs.clear(); in resetOptions()
1552 tokenize(arg, ",", sra_accs); in parseOption()
4823 sra_accs, // SRA accessions in driver()
5142 got_reads = got_reads || !sra_accs.empty(); in bowtie()
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | pat.cpp | 335 const EList<string>& sra_accs, argument
365 for(size_t i = 0; i < sra_accs.size(); i++) {
366 const EList<string>* qs = &sra_accs;
371 tmp.push_back(sra_accs[i]);
440 if(m12.size() > 0 || sra_accs.size() > 0) {
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| H A D | pat.h | 325 const EList<string>& sra_accs,
1641 const EList<string>& sra_accs,
1645 sra_accs_(sra_accs), in PatternSource()
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| H A D | hisat2.cpp | 271 static EList<string> sra_accs; variable
515 sra_accs.clear(); in resetOptions()
1730 tokenize(arg, ",", sra_accs); format = SRA_FASTA; in parseOption()
3750 sra_accs, // SRA accessions in driver()
4273 got_reads = got_reads || !sra_accs.empty(); in hisat2()
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