| /dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
| H A D | ensassemblymapper.h | 128 ajint srstrand,
192 ajint srstrand,
232 ajint srstrand,
259 ajint srstrand,
274 ajint srstrand,
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| H A D | ensslice.c | 1921 ajint srstrand = 0; in ensSliceFetchSequenceSubSeq() local
2533 ajint srstrand = 0; in ensSliceFetchSlicesub() local
5291 srstrand, in ensSliceadaptorFetchAllbyRegionunique()
5744 ajStrDel(&srstrand); in ensSliceadaptorFetchByName()
5824 srstrand, in ensSliceadaptorFetchByRegion()
5929 if (srstrand == 0) in ensSliceadaptorFetchByRegion()
5930 srstrand = 1; in ensSliceadaptorFetchByRegion()
6005 srstrand, in ensSliceadaptorFetchBySeqregionIdentifier()
6066 if (!srstrand) in ensSliceadaptorFetchBySeqregionIdentifier()
6067 srstrand = 1; in ensSliceadaptorFetchBySeqregionIdentifier()
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| H A D | ensassemblymapper.c | 1161 srstrand, in ensGenericassemblymapperMap()
1217 srstrand, in ensGenericassemblymapperMap()
1225 srstrand, in ensGenericassemblymapperMap()
2152 srstrand, in ensChainedassemblymapperMap()
2296 srstrand, in ensChainedassemblymapperMap()
2304 srstrand, in ensChainedassemblymapperMap()
2916 srstrand, in ensToplevelassemblymapperMap()
3008 srstrand, in ensToplevelassemblymapperMap()
3451 ajint srstrand, in ensAssemblymapperMapSeqregion() argument
3469 srstrand, in ensAssemblymapperMapSeqregion()
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| H A D | enssimple.c | 1323 ajint srstrand = 0; in simplefeatureadaptorFetchAllbyStatement() local
1374 srstrand = 0; in simplefeatureadaptorFetchAllbyStatement()
1384 ajSqlcolumnToInt(sqlr, &srstrand); in simplefeatureadaptorFetchAllbyStatement()
1394 srstrand, in simplefeatureadaptorFetchAllbyStatement()
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| H A D | ensslice.h | 295 ajint srstrand,
321 ajint srstrand,
328 ajint srstrand,
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| H A D | ensprediction.c | 1798 ajint srstrand = 0; in predictionexonadaptorFetchAllbyStatement() local
1847 srstrand = 0; in predictionexonadaptorFetchAllbyStatement()
1858 ajSqlcolumnToInt(sqlr, &srstrand); in predictionexonadaptorFetchAllbyStatement()
1868 srstrand, in predictionexonadaptorFetchAllbyStatement()
4314 ajint srstrand = 0; in predictiontranscriptadaptorFetchAllbyStatement() local
4365 srstrand = 0; in predictiontranscriptadaptorFetchAllbyStatement()
4375 ajSqlcolumnToInt(sqlr, &srstrand); in predictiontranscriptadaptorFetchAllbyStatement()
4384 srstrand, in predictiontranscriptadaptorFetchAllbyStatement()
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| H A D | enssequence.c | 1010 ajint srstrand = 0; in ensSequenceadaptorFetchSliceSubSeq() local
1037 srstrand = +strand; in ensSequenceadaptorFetchSliceSubSeq()
1045 srstrand = -strand; in ensSequenceadaptorFetchSliceSubSeq()
1060 srstrand); in ensSequenceadaptorFetchSliceSubSeq()
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| H A D | ensalign.c | 2612 ajint srstrand = 0; in dnaalignfeatureadaptorFetchAllbyStatement() local
2679 srstrand = 0; in dnaalignfeatureadaptorFetchAllbyStatement()
2700 ajSqlcolumnToInt(sqlr, &srstrand); in dnaalignfeatureadaptorFetchAllbyStatement()
2720 srstrand, in dnaalignfeatureadaptorFetchAllbyStatement()
3551 ajint srstrand = 0; in proteinalignfeatureadaptorFetchAllbyStatement() local
3615 srstrand = 0; in proteinalignfeatureadaptorFetchAllbyStatement()
3633 ajSqlcolumnToInt(sqlr, &srstrand); in proteinalignfeatureadaptorFetchAllbyStatement()
3650 srstrand, in proteinalignfeatureadaptorFetchAllbyStatement()
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| H A D | ensbaseadaptor.h | 167 ajint srstrand,
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| H A D | ensoperon.c | 1937 ajint srstrand = 0; in operonadaptorFetchAllbyStatement() local
1993 srstrand = 0; in operonadaptorFetchAllbyStatement()
2007 ajSqlcolumnToInt(sqlr, &srstrand); in operonadaptorFetchAllbyStatement()
2020 srstrand, in operonadaptorFetchAllbyStatement()
4643 ajint srstrand = 0; in operontranscriptadaptorFetchAllbyStatement() local
4699 srstrand = 0; in operontranscriptadaptorFetchAllbyStatement()
4714 ajSqlcolumnToInt(sqlr, &srstrand); in operontranscriptadaptorFetchAllbyStatement()
4728 srstrand, in operontranscriptadaptorFetchAllbyStatement()
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| H A D | ensintron.c | 2588 ajint srstrand = 0; in intronsupportingevidenceadaptorFetchAllbyStatement() local
2648 srstrand = 0; in intronsupportingevidenceadaptorFetchAllbyStatement()
2661 ajSqlcolumnToInt(sqlr, &srstrand); in intronsupportingevidenceadaptorFetchAllbyStatement()
2673 srstrand, in intronsupportingevidenceadaptorFetchAllbyStatement()
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| H A D | ensrepeat.c | 3152 ajint srstrand = 0; in repeatfeatureadaptorFetchAllbyStatement() local
3220 srstrand = 0; in repeatfeatureadaptorFetchAllbyStatement()
3233 ajSqlcolumnToInt(sqlr, &srstrand); in repeatfeatureadaptorFetchAllbyStatement()
3245 srstrand, in repeatfeatureadaptorFetchAllbyStatement()
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| H A D | enskaryotype.c | 1292 ajint srstrand = 1; in karyotypebandadaptorFetchAllbyStatement() local
1361 srstrand, in karyotypebandadaptorFetchAllbyStatement()
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| H A D | ensditag.c | 3246 ajint srstrand = 0; in ditagfeatureadaptorFetchAllbyStatement() local
3329 srstrand = 0; in ditagfeatureadaptorFetchAllbyStatement()
3345 ajSqlcolumnToInt(sqlr, &srstrand); in ditagfeatureadaptorFetchAllbyStatement()
3360 srstrand, in ditagfeatureadaptorFetchAllbyStatement()
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| H A D | ensgvvariation.c | 392 ajint srstrand,
6439 ajint srstrand, in gvvariationadaptorRetrieveFlankFromCore() argument
6475 srstrand, in gvvariationadaptorRetrieveFlankFromCore()
6514 ajint srstrand = 0; in ensGvvariationadaptorRetrieveFlank() local
6571 srstrand = 0; in ensGvvariationadaptorRetrieveFlank()
6582 ajSqlcolumnToInt(sqlr, &srstrand); in ensGvvariationadaptorRetrieveFlank()
6609 srstrand, in ensGvvariationadaptorRetrieveFlank()
8656 ajint srstrand = 0; in gvvariationfeatureadaptorFetchAllbyStatement() local
8717 srstrand = 0; in gvvariationfeatureadaptorFetchAllbyStatement()
8734 ajSqlcolumnToInt(sqlr, &srstrand); in gvvariationfeatureadaptorFetchAllbyStatement()
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| H A D | ensmiscellaneous.c | 3662 ajint srstrand = 0; in miscellaneousfeatureadaptorFetchAllbyStatement() local
3737 srstrand = 0; in miscellaneousfeatureadaptorFetchAllbyStatement()
3748 ajSqlcolumnToInt(sqlr, &srstrand); in miscellaneousfeatureadaptorFetchAllbyStatement()
3784 srstrand, in miscellaneousfeatureadaptorFetchAllbyStatement()
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| H A D | ensbaseadaptor.c | 1683 ajint srstrand, in ensBaseadaptorRetrieveFeature() argument
1755 slstrand = srstrand; in ensBaseadaptorRetrieveFeature()
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| H A D | ensexon.c | 4276 ajint srstrand = 0; in exonadaptorFetchAllbyStatement() local
4332 srstrand = 0; in exonadaptorFetchAllbyStatement()
4348 ajSqlcolumnToInt(sqlr, &srstrand); in exonadaptorFetchAllbyStatement()
4363 srstrand, in exonadaptorFetchAllbyStatement()
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| H A D | ensgene.c | 4158 ajint srstrand = 0; in geneadaptorFetchAllbyStatement() local
4237 srstrand = 0; in geneadaptorFetchAllbyStatement()
4268 ajSqlcolumnToInt(sqlr, &srstrand); in geneadaptorFetchAllbyStatement()
4295 srstrand, in geneadaptorFetchAllbyStatement()
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| H A D | ensdensity.c | 3032 ajuint srstrand = 1; in densityfeatureadaptorFetchAllbyStatement() local
3102 srstrand, in densityfeatureadaptorFetchAllbyStatement()
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| H A D | ensmarker.c | 5281 ajint srstrand = 1; in markerfeatureadaptorFetchAllbyStatement() local
5397 srstrand, in markerfeatureadaptorFetchAllbyStatement()
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| H A D | enstranscript.c | 7762 ajint srstrand = 0; in transcriptadaptorFetchAllbyStatement() local
7839 srstrand = 0; in transcriptadaptorFetchAllbyStatement()
7869 ajSqlcolumnToInt(sqlr, &srstrand); in transcriptadaptorFetchAllbyStatement()
7894 srstrand, in transcriptadaptorFetchAllbyStatement()
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