Searched refs:start_pos_type (Results 1 – 11 of 11) sorted by relevance
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Location/ |
H A D | AvWithinCoordPolicy.pm | 108 if(($loc->start_pos_type() eq 'WITHIN') || 109 ($loc->start_pos_type() eq 'BETWEEN')) {
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H A D | Fuzzy.pm | 158 $start_fuz && $self->start_pos_type($start_fuz); 240 $self->start_pos_type($encode); 329 sub start_pos_type { subroutine 474 'start_code' => $self->start_pos_type,
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H A D | Split.pm | 533 sub start_pos_type { subroutine 544 return ( @locs ) ? $locs[0]->start_pos_type : undef;
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H A D | Atomic.pm | 304 sub start_pos_type { subroutine
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/ |
H A D | SeqUtils.pm | 1014 my $start_type = $_->can('start_pos_type') ? $_->start_pos_type : undef; 1158 my $start_type = $_->can('start_pos_type') ? $_->start_pos_type : undef; 1296 $loc->start_pos_type($start_type) if $start_type; 1534 $self->_coord_revcom( $_->start, $_->start_pos_type, $length ); 1540 my $newend_type = $_->start_pos_type; 1541 $newend_type = 'BEFORE' if $_->start_pos_type eq 'AFTER'; 1542 $newend_type = 'AFTER' if $_->start_pos_type eq 'BEFORE';
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H A D | LocationI.pm | 222 sub start_pos_type { subroutine
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Tools/ |
H A D | Genpred.t | 123 is $gmexon->location->start_pos_type(), 'BEFORE'; 135 is $gmexon->location->start_pos_type(), 'EXACT'; 277 is $g3gene_a->location->start_pos_type(), 'BEFORE'; 286 is $g3gene_a->location->start_pos_type(), 'EXACT';
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqFeature/ |
H A D | LocationFactory.t | 161 is($loc->start_pos_type(), $res[3]);
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H A D | Location.t | 86 is($fuzzy->start_pos_type, 'BEFORE');
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqFeature/ |
H A D | Lite.pm | 620 sub start_pos_type { 'EXACT' } subroutine
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqTools/ |
H A D | SeqUtils.t | 517 [$subfeat1->location->end_pos_type, $subfeat1->location->start_pos_type], 518 [$subfeat1_ins->location->end_pos_type, $subfeat1_ins->location->start_pos_type],
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