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Searched refs:start_pos_type (Results 1 – 11 of 11) sorted by relevance

/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Location/
H A DAvWithinCoordPolicy.pm108 if(($loc->start_pos_type() eq 'WITHIN') ||
109 ($loc->start_pos_type() eq 'BETWEEN')) {
H A DFuzzy.pm158 $start_fuz && $self->start_pos_type($start_fuz);
240 $self->start_pos_type($encode);
329 sub start_pos_type { subroutine
474 'start_code' => $self->start_pos_type,
H A DSplit.pm533 sub start_pos_type { subroutine
544 return ( @locs ) ? $locs[0]->start_pos_type : undef;
H A DAtomic.pm304 sub start_pos_type { subroutine
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/
H A DSeqUtils.pm1014 my $start_type = $_->can('start_pos_type') ? $_->start_pos_type : undef;
1158 my $start_type = $_->can('start_pos_type') ? $_->start_pos_type : undef;
1296 $loc->start_pos_type($start_type) if $start_type;
1534 $self->_coord_revcom( $_->start, $_->start_pos_type, $length );
1540 my $newend_type = $_->start_pos_type;
1541 $newend_type = 'BEFORE' if $_->start_pos_type eq 'AFTER';
1542 $newend_type = 'AFTER' if $_->start_pos_type eq 'BEFORE';
H A DLocationI.pm222 sub start_pos_type { subroutine
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Tools/
H A DGenpred.t123 is $gmexon->location->start_pos_type(), 'BEFORE';
135 is $gmexon->location->start_pos_type(), 'EXACT';
277 is $g3gene_a->location->start_pos_type(), 'BEFORE';
286 is $g3gene_a->location->start_pos_type(), 'EXACT';
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqFeature/
H A DLocationFactory.t161 is($loc->start_pos_type(), $res[3]);
H A DLocation.t86 is($fuzzy->start_pos_type, 'BEFORE');
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqFeature/
H A DLite.pm620 sub start_pos_type { 'EXACT' } subroutine
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqTools/
H A DSeqUtils.t517 [$subfeat1->location->end_pos_type, $subfeat1->location->start_pos_type],
518 [$subfeat1_ins->location->end_pos_type, $subfeat1_ins->location->start_pos_type],