Searched refs:stdFreqRatios (Results 1 – 15 of 15) sorted by relevance
62 retval->stdFreqRatios = _PSIMatrixFrequencyRatiosNew(matrix_name); in Kappa_posSearchItemsNew()63 if ( !retval->stdFreqRatios ) { in Kappa_posSearchItemsNew()87 if (posSearch->stdFreqRatios) { in Kappa_posSearchItemsFree()88 posSearch->stdFreqRatios = in Kappa_posSearchItemsFree()89 _PSIMatrixFrequencyRatiosFree(posSearch->stdFreqRatios); in Kappa_posSearchItemsFree()
64 SFreqRatios* stdFreqRatios; member
587 SFreqRatios * stdFreqRatios = NULL; /* frequency ratios for the in s_GetPosBasedStartFreqRatios() local594 stdFreqRatios = _PSIMatrixFrequencyRatiosNew(matrixName); in s_GetPosBasedStartFreqRatios()595 if (stdFreqRatios == NULL) { in s_GetPosBasedStartFreqRatios()600 returnRatios[i][j] = stdFreqRatios->data[query[i]][j]; in s_GetPosBasedStartFreqRatios()603 stdFreqRatios = _PSIMatrixFrequencyRatiosFree(stdFreqRatios); in s_GetPosBasedStartFreqRatios()643 SFreqRatios * stdFreqRatios = NULL; in s_GetStartFreqRatios() local645 stdFreqRatios = _PSIMatrixFrequencyRatiosNew(matrixName); in s_GetStartFreqRatios()646 if (stdFreqRatios == NULL) { in s_GetStartFreqRatios()651 returnRatios[i][j] = stdFreqRatios->data[i][j]; in s_GetStartFreqRatios()654 stdFreqRatios = _PSIMatrixFrequencyRatiosFree(stdFreqRatios); in s_GetStartFreqRatios()
597 SFreqRatios * stdFreqRatios = NULL; /* frequency ratios for the in s_GetPosBasedStartFreqRatios() local604 stdFreqRatios = _PSIMatrixFrequencyRatiosNew(matrixName); in s_GetPosBasedStartFreqRatios()605 if (stdFreqRatios == NULL) { in s_GetPosBasedStartFreqRatios()610 returnRatios[i][j] = stdFreqRatios->data[query[i]][j]; in s_GetPosBasedStartFreqRatios()613 stdFreqRatios = _PSIMatrixFrequencyRatiosFree(stdFreqRatios); in s_GetPosBasedStartFreqRatios()653 SFreqRatios * stdFreqRatios = NULL; in s_GetStartFreqRatios() local655 stdFreqRatios = _PSIMatrixFrequencyRatiosNew(matrixName); in s_GetStartFreqRatios()656 if (stdFreqRatios == NULL) { in s_GetStartFreqRatios()661 returnRatios[i][j] = stdFreqRatios->data[i][j]; in s_GetStartFreqRatios()664 stdFreqRatios = _PSIMatrixFrequencyRatiosFree(stdFreqRatios); in s_GetStartFreqRatios()
897 FreqRatios * stdFreqRatios = NULL; in Kappa_GetStartFreqRatios() local902 stdFreqRatios = PSIMatrixFrequencyRatiosNew(matrixName); in Kappa_GetStartFreqRatios()906 returnRatios[i][j] = stdFreqRatios->data[query[i]][j]; in Kappa_GetStartFreqRatios()912 returnRatios[i][j] = stdFreqRatios->data[i][j]; in Kappa_GetStartFreqRatios()916 stdFreqRatios = PSIMatrixFrequencyRatiosFree(stdFreqRatios); in Kappa_GetStartFreqRatios()984 posSearch->stdFreqRatios = PSIMatrixFrequencyRatiosNew(matrixName); in Kappa_ScalePosMatrix()1016 PSIMatrixFrequencyRatiosFree(posSearch->stdFreqRatios); in Kappa_ScalePosMatrix()
552 posSearch->stdFreqRatios = NULL; in posAllocateMemory()618 posSearch->stdFreqRatios = PSIMatrixFrequencyRatiosFree(posSearch->stdFreqRatios); in posFreeMemory()1660 if ( !posSearch->stdFreqRatios ) { in posFreqsToMatrix()1667 if (posSearch->stdFreqRatios->data[q[c]][a] == 0.0) { in posFreqsToMatrix()1671 posSearch->stdFreqRatios->bit_scale_factor * in posFreqsToMatrix()1857 if (!posSearch->stdFreqRatios) { in posComputePseudoFreqs()1858 posSearch->stdFreqRatios = in posComputePseudoFreqs()1894 posSearch->stdFreqRatios->data[a][aSub]); in posComputePseudoFreqs()2020 posSearch->stdFreqRatios = in WposComputation()2060 posSearch->stdFreqRatios = PSIMatrixFrequencyRatiosFree(posSearch->stdFreqRatios); in WposComputation()[all …]
310 FreqRatios* stdFreqRatios; /* underlying scoring matrix's frequency ratios */ member
272 posSearch->stdFreqRatios = in convertToMatrices()435 PSIMatrixFrequencyRatiosFree(posSearch->stdFreqRatios); in convertToMatrices()
445 posSearch->stdFreqRatios = PSIMatrixFrequencyRatiosNew(matrix_name); in RPSUpdateStatistics()448 posSearch->stdFreqRatios = PSIMatrixFrequencyRatiosFree( in RPSUpdateStatistics()449 posSearch->stdFreqRatios); in RPSUpdateStatistics()
307 PSIMatrixFrequencyRatiosFree(posSearch->stdFreqRatios); in CddposFreeMemory()