/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | seqid_guesser.cpp | 221 vector<CBioseq_Handle> CSeqIdGuesser::FindMatches(CRef<CStringConstraint> string_constraint) in FindMatches() argument 225 if (!string_constraint) { in FindMatches() 227 } else if (string_constraint->GetMatchType() == CStringConstraint::eMatchType_Equals in FindMatches() 228 && !string_constraint->GetIgnoreCase() in FindMatches() 229 && !string_constraint->GetIgnoreSpace()) { in FindMatches() 230 CRef<CSeq_id> id = Guess(string_constraint->GetMatchText()); in FindMatches() 241 if (string_constraint->DoesTextMatch(it->first)) { in FindMatches() 255 …SeqIdGuesser::DoesSeqMatchConstraint(CBioseq_Handle bsh, CRef<CStringConstraint> string_constraint) in DoesSeqMatchConstraint() argument 259 } else if (!string_constraint) { in DoesSeqMatchConstraint() 267 bool this_match = string_constraint->DoesTextMatch(*it); in DoesSeqMatchConstraint() [all …]
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H A D | field_handler.cpp | 155 … CObject& object, const string& field_name, CRef<CStringConstraint> string_constraint, CRef<CScope… in DoesObjectMatchFieldConstraint() argument 157 if (NStr::IsBlank(field_name) || !string_constraint) { in DoesObjectMatchFieldConstraint() 173 return string_constraint->DoesListMatch(val_list); in DoesObjectMatchFieldConstraint() 177 …t (const CApplyObject& object, const string& field_name, CRef<CStringConstraint> string_constraint) in DoesApplyObjectMatchFieldConstraint() argument 179 if (NStr::IsBlank(field_name) || !string_constraint) { in DoesApplyObjectMatchFieldConstraint() 195 return string_constraint->DoesListMatch(val_list); in DoesApplyObjectMatchFieldConstraint()
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H A D | gb_block_field.cpp | 180 …d CGBBlockField::SetConstraint(const string& field, CConstRef<CStringConstraint> string_constraint) in SetConstraint() argument 183 if (field_type == m_FieldType && string_constraint) { in SetConstraint() 185 m_StringConstraint->Assign(*string_constraint); in SetConstraint()
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H A D | dblink_field.cpp | 268 …BLinkField::SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) in SetConstraint() argument 272 if (m_ConstraintFieldType == eDBLinkFieldType_Unknown || !string_constraint) { in SetConstraint() 273 string_constraint.Reset(NULL); in SetConstraint() 276 m_StringConstraint->Assign(*string_constraint); in SetConstraint() 353 …s(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) in GetObjects() argument 361 if (CSeqIdGuesser::DoesSeqMatchConstraint(*bi, string_constraint)) { in GetObjects() 368 … if (DoesObjectMatchFieldConstraint (**it, constraint_field, string_constraint, scope)) { in GetObjects()
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H A D | text_desc_field.cpp | 61 …s(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) in GetObjects() argument 69 if (CSeqIdGuesser::DoesSeqMatchConstraint(*bi, string_constraint)) { in GetObjects() 76 … if (DoesObjectMatchFieldConstraint (**it, constraint_field, string_constraint, scope)) { in GetObjects()
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H A D | struc_comm_field.cpp | 225 …mmentField::SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) in SetConstraint() argument 229 string_constraint.Reset(NULL); in SetConstraint() 232 m_StringConstraint->Assign(*string_constraint); in SetConstraint() 280 …s(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) in GetObjects() argument 288 if (CSeqIdGuesser::DoesSeqMatchConstraint(*bi, string_constraint)) { in GetObjects() 295 … if (DoesObjectMatchFieldConstraint (**it, constraint_field, string_constraint, scope)) { in GetObjects()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | seqid_guesser.cpp | 221 vector<CBioseq_Handle> CSeqIdGuesser::FindMatches(CRef<CStringConstraint> string_constraint) in FindMatches() argument 225 if (!string_constraint) { in FindMatches() 227 } else if (string_constraint->GetMatchType() == CStringConstraint::eMatchType_Equals in FindMatches() 228 && !string_constraint->GetIgnoreCase() in FindMatches() 229 && !string_constraint->GetIgnoreSpace()) { in FindMatches() 230 CRef<CSeq_id> id = Guess(string_constraint->GetMatchText()); in FindMatches() 241 if (string_constraint->DoesTextMatch(it->first)) { in FindMatches() 255 …SeqIdGuesser::DoesSeqMatchConstraint(CBioseq_Handle bsh, CRef<CStringConstraint> string_constraint) in DoesSeqMatchConstraint() argument 259 } else if (!string_constraint) { in DoesSeqMatchConstraint() 267 bool this_match = string_constraint->DoesTextMatch(*it); in DoesSeqMatchConstraint() [all …]
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H A D | field_handler.cpp | 155 … CObject& object, const string& field_name, CRef<CStringConstraint> string_constraint, CRef<CScope… in DoesObjectMatchFieldConstraint() argument 157 if (NStr::IsBlank(field_name) || !string_constraint) { in DoesObjectMatchFieldConstraint() 173 return string_constraint->DoesListMatch(val_list); in DoesObjectMatchFieldConstraint() 177 …t (const CApplyObject& object, const string& field_name, CRef<CStringConstraint> string_constraint) in DoesApplyObjectMatchFieldConstraint() argument 179 if (NStr::IsBlank(field_name) || !string_constraint) { in DoesApplyObjectMatchFieldConstraint() 195 return string_constraint->DoesListMatch(val_list); in DoesApplyObjectMatchFieldConstraint()
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H A D | gb_block_field.cpp | 180 …d CGBBlockField::SetConstraint(const string& field, CConstRef<CStringConstraint> string_constraint) in SetConstraint() argument 183 if (field_type == m_FieldType && string_constraint) { in SetConstraint() 185 m_StringConstraint->Assign(*string_constraint); in SetConstraint()
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H A D | dblink_field.cpp | 268 …BLinkField::SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) in SetConstraint() argument 272 if (m_ConstraintFieldType == eDBLinkFieldType_Unknown || !string_constraint) { in SetConstraint() 273 string_constraint.Reset(NULL); in SetConstraint() 276 m_StringConstraint->Assign(*string_constraint); in SetConstraint() 353 …s(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) in GetObjects() argument 361 if (CSeqIdGuesser::DoesSeqMatchConstraint(*bi, string_constraint)) { in GetObjects() 368 … if (DoesObjectMatchFieldConstraint (**it, constraint_field, string_constraint, scope)) { in GetObjects()
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H A D | text_desc_field.cpp | 61 …s(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) in GetObjects() argument 69 if (CSeqIdGuesser::DoesSeqMatchConstraint(*bi, string_constraint)) { in GetObjects() 76 … if (DoesObjectMatchFieldConstraint (**it, constraint_field, string_constraint, scope)) { in GetObjects()
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H A D | struc_comm_field.cpp | 225 …mmentField::SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) in SetConstraint() argument 229 string_constraint.Reset(NULL); in SetConstraint() 232 m_StringConstraint->Assign(*string_constraint); in SetConstraint() 280 …s(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) in GetObjects() argument 288 if (CSeqIdGuesser::DoesSeqMatchConstraint(*bi, string_constraint)) { in GetObjects() 295 … if (DoesObjectMatchFieldConstraint (**it, constraint_field, string_constraint, scope)) { in GetObjects()
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/dports/databases/libdbi-drivers/libdbi-drivers-0.9.0/tests/cgreen/tests/ |
H A D | constraint_tests.c | 91 Constraint *string_constraint = with(name, is_non_empty_string); 93 assert_equal(compare_constraint(string_constraint, is_non_empty_string), 1); 95 destroy_constraint(string_constraint); 100 string_constraint = with(name, is_non_empty_string); 101 assert_equal(compare_constraint(string_constraint, is_non_empty_string), 1); 103 destroy_constraint(string_constraint);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/ |
H A D | field_handler.hpp | 55 …q_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) = 0; 66 …virtual void SetConstraint(const string& field, CConstRef<CStringConstraint> string_constraint) = … 84 … CObject& object, const string& field_name, CRef<CStringConstraint> string_constraint, CRef<CScope… 85 … (const CApplyObject& object, const string& field_name, CRef<CStringConstraint> string_constraint);
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H A D | seqid_guesser.hpp | 49 vector<CBioseq_Handle> FindMatches(CRef<CStringConstraint> string_constraint); 50 … static bool DoesSeqMatchConstraint(CBioseq_Handle bsh, CRef<CStringConstraint> string_constraint);
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H A D | text_desc_field.hpp | 54 …(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint); 63 …al void SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) {}; in SetConstraint() argument
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H A D | dblink_field.hpp | 61 …ry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) override; 75 …d SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) override;
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H A D | struc_comm_field.hpp | 64 …(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint); 78 …rtual void SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint);
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H A D | gb_block_field.hpp | 68 virtual void SetConstraint(const string& field, CConstRef<CStringConstraint> string_constraint);
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/ |
H A D | field_handler.hpp | 55 …q_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) = 0; 66 …virtual void SetConstraint(const string& field, CConstRef<CStringConstraint> string_constraint) = … 84 … CObject& object, const string& field_name, CRef<CStringConstraint> string_constraint, CRef<CScope… 85 … (const CApplyObject& object, const string& field_name, CRef<CStringConstraint> string_constraint);
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H A D | seqid_guesser.hpp | 49 vector<CBioseq_Handle> FindMatches(CRef<CStringConstraint> string_constraint); 50 … static bool DoesSeqMatchConstraint(CBioseq_Handle bsh, CRef<CStringConstraint> string_constraint);
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H A D | text_desc_field.hpp | 54 …(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint); 63 …al void SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) {}; in SetConstraint() argument
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H A D | dblink_field.hpp | 61 …ry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint) override; 75 …d SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint) override;
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H A D | struc_comm_field.hpp | 64 …(CSeq_entry_Handle seh, const string& constraint_field, CRef<CStringConstraint> string_constraint); 78 …rtual void SetConstraint(const string& field_name, CConstRef<CStringConstraint> string_constraint);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/ |
H A D | suspect_product_names.cpp | 497 if( string_constraint.IsSetMatch_location() || in s_SummarizeStringConstraint() 498 string_constraint.IsSetCase_sensitive() || in s_SummarizeStringConstraint() 499 string_constraint.IsSetIgnore_space() || in s_SummarizeStringConstraint() 500 string_constraint.IsSetIgnore_punct() || in s_SummarizeStringConstraint() 501 string_constraint.IsSetIgnore_words() || in s_SummarizeStringConstraint() 502 string_constraint.IsSetNot_present() || in s_SummarizeStringConstraint() 503 string_constraint.IsSetIs_all_caps() || in s_SummarizeStringConstraint() 504 string_constraint.IsSetIs_all_lower() || in s_SummarizeStringConstraint() 505 string_constraint.IsSetIs_all_punct() || in s_SummarizeStringConstraint() 506 string_constraint.IsSetIgnore_weasel() || in s_SummarizeStringConstraint() [all …]
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