Searched refs:suboptimal_score_end (Results 1 – 3 of 3) sorted by relevance
117 static int suboptimal_score_end; variable143 suboptimal_score_end = suboptimal_score_end_in; in Stage2_setup()3327 if (bestscore > 2*suboptimal_score_end) { in Linkmatrix_get_cells_fwd()3328 threshold_score = bestscore - suboptimal_score_end; in Linkmatrix_get_cells_fwd()3506 if (bestscore > 2*suboptimal_score_end) {3507 threshold_score = bestscore - suboptimal_score_end;
395 static int suboptimal_score_end = 3; /* Determined by simulations to have diminishing returns above… variable5800 suboptimal_score_end = atoi(check_valid_int(optarg)); in parse_command_line()7013 suboptimal_score_start,suboptimal_score_end,sufflookback,nsufflookback,maxintronlen,mode, in main()
12036 suboptimal_score_start and suboptimal_score_end, based on simulations12039 suboptimal_score_end and suboptimal_score_start