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Searched refs:sumProb (Results 1 – 12 of 12) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/
H A DMultivariateGaussian.java17 public double sumProb; field in MultivariateGaussian
164 sumProb = 1E-10; in maximizeGaussian()
172 sumProb += prob; in maximizeGaussian()
175 divideEqualsMu( sumProb ); in maximizeGaussian()
177 final double shrinkageFactor = (SHRINKAGE * sumProb) / (SHRINKAGE + sumProb); in maximizeGaussian()
202 mu[iii] = (sumProb * mu[iii] + SHRINKAGE * empiricalMu[iii]) / (sumProb + SHRINKAGE); in maximizeGaussian()
206 hyperParameter_b = sumProb + SHRINKAGE; in maximizeGaussian()
213 sumProb = 0.0; in evaluateFinalModelParameters()
220 sumProb += prob; in evaluateFinalModelParameters()
223 divideEqualsMu( sumProb ); in evaluateFinalModelParameters()
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H A DGaussianMixtureModel.java76 gaussian.sumProb = 1.0 / ((double) gaussians.size()); in initializeRandomModel()
154 final double sumPK = gaussians.stream().mapToDouble(g -> g.sumProb).sum(); in normalizePMixtureLog10()
157 …final double[] pGaussianLog10 = gaussians.stream().mapToDouble(g -> Math.log10(g.sumProb) - log10S… in normalizePMixtureLog10()
/dports/math/mlpack/mlpack-3.4.2/src/mlpack/core/dists/
H A Dgaussian_distribution.cpp149 double sumProb = 0; in Train() local
156 sumProb += probabilities[i]; in Train()
159 if (sumProb == 0) in Train()
169 if (sumProb > 0) in Train()
170 mean /= sumProb; in Train()
180 if (sumProb > 0) in Train()
181 covariance /= sumProb; in Train()
H A Ddiscrete_distribution.cpp32 double sumProb = 0; in Random() local
36 if ((sumProb += probabilities[d][obs]) >= randObs) in Random()
43 if (sumProb > 1.0) in Random()
/dports/math/mlpack/mlpack-3.4.2/src/mlpack/methods/gmm/
H A Dgmm.cpp109 double sumProb = 0; in Random() local
112 sumProb += weights(g); in Random()
113 if (gaussRand <= sumProb) in Random()
H A Ddiagonal_gmm.cpp111 double sumProb = 0; in Random() local
114 sumProb += weights(g); in Random()
115 if (gaussRand <= sumProb) in Random()
/dports/audio/ardour6/Ardour-6.8.0/libs/vamp-pyin/
H A DYinUtil.cpp274 float sumProb = 0; in yinProb() local
296 sumProb += peakProb[tau]; in yinProb()
309 if (sumProb > 0) { in yinProb()
312 peakProb[i] = peakProb[i] / sumProb * peakProb[minInd]; in yinProb()
H A DLocalCandidatePYIN.cpp367 float sumProb = 0; in getRemainingFeatures() local
376 sumProb += prob; in getRemainingFeatures()
382 tempPitchProb[iFrame][iProb].second /= sumProb; in getRemainingFeatures()
/dports/biology/iqtree/IQ-TREE-2.0.6/alignment/
H A Dmaalignment.cpp183 double sumProb = 0; in generateExpectedAlignment() local
200 sumProb += (double)patFre*log((double)aln->at(patID).frequency/(double)nsite); in generateExpectedAlignment()
206 prob = fac - sumFac + sumProb; in generateExpectedAlignment()
H A Dalignment.cpp4864 double sumProb = 0; in multinomialProb() local
4876 prob = fac - sumFac + sumProb; in multinomialProb()
4935 double sumProb = 0; in multinomialProb() local
4940 sumProb += (double)patFre*log((double)at(patID).frequency/(double)alignLen); in multinomialProb()
4942 prob = fac - sumFac + sumProb; in multinomialProb()
5001 double sumProb = 0; in multinomialProb() local
5006 sumProb += (double)patFre*log((double)at(patID).frequency/(double)alignLen); in multinomialProb()
5008 prob = fac - sumFac + sumProb; in multinomialProb()
5024 double sumProb = 0; in multinomialProb() local
5029 sumProb += (double)patFre*log((double)at(patID).frequency/(double)alignLen); in multinomialProb()
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/dports/biology/mmseqs2/MMseqs2-13-45111/src/commons/
H A DSequence.cpp291 float sumProb = 0.0; in mapProfile() local
293 sumProb += profile[l * PROFILE_AA_SIZE + aa]; in mapProfile()
295 if(sumProb > 0.9){ in mapProfile()
/dports/math/mlpack/mlpack-3.4.2/src/mlpack/tests/
H A Dhmm_test.cpp363 double sumProb = 0; variable
366 sumProb += transition(st, states[n][t - 1]);
367 if (sumProb >= state)