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Searched refs:sumoverlap (Results 1 – 2 of 2) sorted by relevance

/dports/biology/mafft/mafft-7.267-without-extensions/core/
H A Dio.c84 int sumoverlap;
92 sumoverlap = 0;
218 int sumoverlap; in addlocalhom_r() local
226 sumoverlap = 0; in addlocalhom_r()
342 int sumoverlap; in putlocalhom3() local
352 sumoverlap = 0; in putlocalhom3()
487 int sumoverlap; in putlocalhom_ext() local
496 sumoverlap = 0; in putlocalhom_ext()
617 int sumoverlap; in putlocalhom_str() local
625 sumoverlap = 0; in putlocalhom_str()
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H A Dpairlocalalign.c137 int sumoverlap; in putlocalhom_last() local
160 sumoverlap = 0; in putlocalhom_last()
205 sumoverlap += tmppt->end2-tmppt->start2+1; in putlocalhom_last()
220 tmppt2->overlapaa = sumoverlap; in putlocalhom_last()
221 tmppt2->opt = (double)isumscore * 5.8 / ( 600 * sumoverlap ); in putlocalhom_last()