Searched refs:supertree_data (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/iqtree/IQ-TREE-2.0.6/terraphast/include/terraces/ |
| H A D | advanced.hpp | 17 struct supertree_data { struct
52 supertree_data create_supertree_data(const tree& tree, const bitmatrix& data);
62 bool check_terrace(const supertree_data& data);
71 index fast_count_terrace(const supertree_data& data);
84 index count_terrace(const supertree_data& data);
92 big_integer count_terrace_bigint(const supertree_data& data);
113 big_integer print_terrace_compressed(const supertree_data& data, const name_map& names,
125 big_integer print_terrace(const supertree_data& data, const name_map& names, std::ostream& output);
134 void enumerate_terrace(const supertree_data& data, std::function<void(const tree&)> callback);
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| /dports/biology/iqtree/IQ-TREE-2.0.6/terraphast/lib/ |
| H A D | advanced.cpp | 15 supertree_data create_supertree_data(const tree& tree, const bitmatrix& data) { in create_supertree_data()
62 index fast_count_terrace(const supertree_data& data) { in fast_count_terrace()
71 bool check_terrace(const supertree_data& data) { return fast_count_terrace(data) > 1; } in check_terrace()
73 index count_terrace(const supertree_data& data) { in count_terrace()
82 big_integer count_terrace_bigint(const supertree_data& data) { in count_terrace_bigint()
87 big_integer print_terrace_compressed(const supertree_data& data, const name_map& names, in print_terrace_compressed()
96 big_integer print_terrace(const supertree_data& data, const name_map& names, std::ostream& output) { in print_terrace()
107 void enumerate_terrace(const supertree_data& data, std::function<void(const tree&)> callback) { in enumerate_terrace()
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| H A D | simple.cpp | 22 std::pair<supertree_data, name_map> parse_data(const std::string& nwk_string, in parse_data()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/terraphast/test/ |
| H A D | multitree_iterator.cpp | 39 auto supertree_data = terraces::create_supertree_data(tree, data.matrix); variable
41 auto result = enumerator.run(supertree_data.num_leaves, supertree_data.constraints,
42 supertree_data.root);
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| /dports/biology/iqtree/IQ-TREE-2.0.6/terrace/ |
| H A D | terrace.h | 76 terraces::supertree_data supertree;
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| /dports/biology/iqtree/IQ-TREE-2.0.6/terraphast/c_lib/ |
| H A D | terraces.cpp | 111 terraces::supertree_data data; in terraceAnalysis()
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