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Searched refs:swScoreThreshPaired (Results 1 – 1 of 1) sorted by relevance

/dports/biology/bbmap/bbmap/current/shared/
H A DTools.java1736 final int swScoreThreshPaired=(int)(maxSwScore*multPaired); in removeLowQualitySitesPaired() local
1737 if(list.get(0).score<swScoreThreshPaired){list.clear(); return initialSize;} in removeLowQualitySitesPaired()
1745 if(ss.slowScore<swScoreThreshPaired){list.remove(i);} in removeLowQualitySitesPaired()
1810 final int swScoreThreshPaired=(int)(maxSwScore*multPaired); in removeLowQualitySitesPaired2() local
1813 if(list.get(0).score<swScoreThreshPaired){list.clear(); return initialSize;} in removeLowQualitySitesPaired2()
1826 int thresh=(i>=expectedSites ? swScoreThreshPaired2 : swScoreThreshPaired); in removeLowQualitySitesPaired2()