| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | edutil.c | 1345 tRNAPtr trp; in SeqFeatDelete()
1415 trp = (tRNAPtr)(rrp->ext.value.ptrvalue); in SeqFeatDelete()
2407 tRNAPtr trp; in IndexedSeqFeatsCopy()
2511 tRNAPtr trp; in SeqFeatsCopy()
2590 trp = (tRNAPtr)(rrp->ext.value.ptrvalue); in SeqFeatsCopy()
3083 tRNAPtr trp; in AdjustFeaturesForInsertion()
3292 tRNAPtr trp; in BioseqInsert()
4282 tRNAPtr trp; in SeqEdInsertAdjustRNA()
4289 trp = (tRNAPtr)(rrp->ext.value.ptrvalue); in SeqEdInsertAdjustRNA()
5920 tRNAPtr trp; in SeqEdSeqFeatDelete()
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| H A D | satutil.c | 1021 tRNAPtr trp; in CopyFeatureFromAlign()
1326 trp = (tRNAPtr)(rrp->ext.value.ptrvalue); in CopyFeatureFromAlign()
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| H A D | seqport.h | 549 NLM_EXTERN Int2 ComposeCodonsRecognizedString (tRNAPtr trna, CharPtr buf, size_t buflen);
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| H A D | sqnutil1.c | 3496 tRNAPtr trp; in ParseAnticodon()
3506 trp = (tRNAPtr) MemNew (sizeof (tRNA)); in ParseAnticodon()
3517 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in ParseAnticodon()
3803 static void UniqueCodons (tRNAPtr trp) in UniqueCodons()
4280 tRNAPtr trp; in HandledGBQualOnRNA()
4300 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in HandledGBQualOnRNA()
4445 trp = (tRNAPtr) MemNew (sizeof (tRNA)); in HandledGBQualOnRNA()
10633 tRNAPtr trp; in CleanupFeatureStrings()
12729 tRNAPtr trp; in IsFeatureCommentRedundant()
13318 tRNAPtr trp; in CleanUpSeqFeat()
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| H A D | findrepl.c | 1290 tRNAPtr trp; in FindReplFeats()
1373 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in FindReplFeats()
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| H A D | asn2gnbi.h | 198 tRNAPtr trp;
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| H A D | sqnutil2.c | 6359 tRNAPtr trna; in AddQualifierToFeatureEx()
6543 trna = (tRNAPtr) MemNew (sizeof (tRNA)); in AddQualifierToFeatureEx()
6552 trna = (tRNAPtr) rrp->ext.value.ptrvalue; in AddQualifierToFeatureEx()
6832 trna = (tRNAPtr) rrp->ext.value.ptrvalue; in AddQualifierToFeatureEx()
16142 tRNAPtr trp; in RevCompOneFeatForBioseq()
20841 tRNAPtr trp; in PromoteIDsProc()
22440 NLM_EXTERN Uint1 GetAaFromtRNA (tRNAPtr trp) in GetAaFromtRNA()
22595 static Int4 CountCodonsRecognized (tRNAPtr trp) in CountCodonsRecognized()
22732 tRNAPtr trp; in FlipCodonRecognizedCallback()
22808 tRNAPtr trp; in RemoveBadCodonRecognizedCallback()
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| H A D | asn2ff3.c | 1591 static CharPtr GettRNAaa (tRNAPtr trna, Boolean error_msgs) in GettRNAaa()
1631 static void ComposetRNANote(Asn2ffJobPtr ajp, NoteStructPtr nsp, tRNAPtr trna) in ComposetRNANote()
1722 tRNAPtr trna=NULL; in DotRNAQuals()
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| H A D | sqnutils.h | 454 NLM_EXTERN Boolean ParseDegenerateCodon (tRNAPtr trp, Uint1Ptr codon);
2338 NLM_EXTERN Uint1 GetAaFromtRNA (tRNAPtr trp);
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| H A D | subutil.c | 3606 tRNAPtr trp; in MakeRNAFeature()
3730 tRNAPtr trp; in AddAntiCodonTotRNA()
3752 trp = (tRNAPtr)(rrp->ext.value.ptrvalue); in AddAntiCodonTotRNA()
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| H A D | salutil.c | 1102 tRNAPtr trp; in ReplaceSeqIdWithSeqIdInFeat()
1124 && (trp = (tRNAPtr) rrp->ext.value.ptrvalue) != NULL in ReplaceSeqIdWithSeqIdInFeat()
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| H A D | macroapi.c | 7343 tRNAPtr trp; in SetRNARefProductString()
7421 tRNAPtr trp; in SetRNAProductString()
7573 tRNAPtr trp; in RemovetRNACodons_Recognized()
7583 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in RemovetRNACodons_Recognized()
7762 tRNAPtr trp; in SettRNACodons_Recognized()
7779 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in SettRNACodons_Recognized()
7850 tRNAPtr trp; in GettRNACodonsRecognized()
7863 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in GettRNACodonsRecognized()
8162 tRNAPtr trp; in SetAnticodon()
8251 tRNAPtr trp; in GetAnticodonLocString()
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| H A D | asn2gnb4.c | 3106 tRNAPtr trna; in FormatFeatureBlockQuals()
6578 tRNAPtr trna; in FormatFeatureBlockEx()
7725 trna = (tRNAPtr) rrp->ext.value.ptrvalue; in FormatFeatureBlockEx()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | releasescan.c | 78 tRNAPtr trna; in DoFeat()
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| H A D | idcleanscan.c | 617 tRNAPtr trp; in DoImpCDSandTrna()
632 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in DoImpCDSandTrna()
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| H A D | cleanasn.c | 887 tRNAPtr trp; in GetFeatureProductName()
973 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in GetFeatureProductName()
10901 tRNAPtr trp; in PromoteIDsProc()
11432 tRNAPtr trna; in SeqToAnticodon()
11442 trna = (tRNAPtr) rrp->ext.value.ptrvalue; in SeqToAnticodon()
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| /dports/biology/ncbi-toolkit/ncbi/object/ |
| H A D | objfdef.c | 1047 tRNAPtr trp; in FeatDefLabelContent()
1193 trp = (tRNAPtr)(trrp->ext.value.ptrvalue); in FeatDefLabelContent()
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| H A D | objfeat.h | 571 } tRNA, PNTR tRNAPtr; /* 0-63 = codon, 255=no data in cell */ typedef
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| H A D | objfeat.c | 3926 tRNAPtr trna; in RnaRefFree()
3936 trna = (tRNAPtr)(rrp->ext.value.ptrvalue); in RnaRefFree()
3959 tRNAPtr trna; in RnaRefAsnWrite()
4001 trna = (tRNAPtr)rrp->ext.value.ptrvalue; in RnaRefAsnWrite()
4078 tRNAPtr trna = NULL; in RnaRefAsnRead()
4137 trna = (tRNAPtr)MemNew(sizeof(tRNA)); in RnaRefAsnRead()
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin9.c | 3481 tRNAPtr trp; in DoFeaturePropWithOffset()
3546 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in DoFeaturePropWithOffset()
3675 tRNAPtr trp; in DoFeaturePropThruAlign()
4770 tRNAPtr trp; in ExtendFeatures()
4803 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in ExtendFeatures()
9207 tRNAPtr trp; in ExtendAllSequencesInSetCallback()
9268 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in ExtendAllSequencesInSetCallback()
10707 tRNAPtr trp; in ShiftFeaturesForUpdate()
11784 tRNAPtr trp; in ImportFeaturesWithOffset()
11871 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in ImportFeaturesWithOffset()
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| H A D | sequin.h | 452 extern void AddCodonListTotRNA (tRNAPtr trna, ValNodePtr codons);
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | toporg.c | 1818 tRNAPtr trna; in CheckMaps()
4914 static Boolean IsCodonCorrect (tRNAPtr trp, Uint1 taa) in IsCodonCorrect()
4978 tRNAPtr trp; in CorrectTrnaCodons()
4983 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in CorrectTrnaCodons()
6569 tRNAPtr trna; in MapSegFeatToMaster()
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| H A D | actutils.c | 3010 tRNAPtr trp; in ReverseBioseqFeatureStrands()
3044 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in ReverseBioseqFeatureStrands()
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| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | salpanel.c | 3496 (tRNAPtr trp, in PropagateAnticodons()
3939 tRNAPtr trp; in PropagateOneFeat()
3986 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in PropagateOneFeat()
4057 trp = (tRNAPtr) rrp->ext.value.ptrvalue; in PropagateOneFeat()
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| H A D | cdrgn.c | 6407 tRNAPtr trna; in RnaRefPtrToRnaPage()
6644 tRNAPtr trna; in RnaPageToRnaRefPtr()
6661 trna = (tRNAPtr) MemNew (sizeof (tRNA)); in RnaPageToRnaRefPtr()
8316 tRNAPtr trp; in ApplyProductToRNA()
8332 trp = (tRNAPtr) MemNew (sizeof (tRNA)); in ApplyProductToRNA()
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