/dports/biology/canu/canu-2.2/src/correction/ |
H A D | falconConsensus.C | 82 int32 t_pos = 0; in getConsensus() local 92 t_pos = tag->t_pos; in getConsensus() 93 msa[t_pos]->incrementCoverage(); in getConsensus() 97 …) with delta %d and current size is %d\n", j, i, t_pos, msa[t_pos]->getCoverage(), tag->delta, msa… in getConsensus() 105 msa[t_pos]->increaseDeltaGroup(tag->delta); in getConsensus() 123 assert(tag->delta < msa[t_pos]->deltaLen); in getConsensus() 124 align_tag_col_t &col = msa[t_pos]->delta[tag->delta]->base[base]; in getConsensus() 146 …pos %d base %d to be %c and length is %d\n", i, j, t_pos, base, tag->p_t_pos, tag->p_q_base, msa[t… in getConsensus()
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H A D | falconConsensus-alignTag.H | 68 t_pos = 0x0fff; in alignTag() 79 int64 t_pos : 24; variable 112 tags[tagsLen].t_pos = tp; in setTag()
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/dports/math/octave-forge-statistics/statistics-1.4.3/inst/ |
H A D | ConfusionMatrixChart.m | 489 t_pos(1) = find (Idx == (t_pos(1) + 1)) - 1; 492 t_pos = t_pos([2 1]) + 0.5; variable 496 t_pos(2) = find (Idx == (t_pos(2) + 1)) - 1; 499 t_pos = t_pos([2 1]) + 0.5; variable 503 t_pos(1) = find (Idx == (t_pos(1) + 1)) - 1; 504 t_pos(2) = find (Idx == (t_pos(2) + 1)) - 1; 507 t_pos = t_pos([2 1]) + 0.5; variable 609 idx = (t_pos(2) - cm_size - 1) * cm_size + t_pos(1) + 1; 613 idx = (t_pos(1) - cm_size - 1) * cm_size + t_pos(2) + 1; 617 idx = t_pos(2) * cm_size + t_pos(1) + 1; [all …]
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/dports/sysutils/heirloom/heirloom-070715/expand/ |
H A D | unexpand.c | 161 while (tp && col > tp->t_pos) in unexpand() 163 if (tp && col == tp->t_pos) { in unexpand() 168 while (col < tp->t_pos) in unexpand() 201 while (*tp && (*tp)->t_pos <= *cp) in spaces() 203 while (*sp && *tp && (*cp + *sp) >= (*tp)->t_pos) { in spaces() 208 *sp -= (*tp)->t_pos - *cp; in spaces() 209 *cp = (*tp)->t_pos; in spaces()
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H A D | tablist.c | 76 tp->t_pos = n; in addtab() 79 if (tq->t_pos >= tp->t_pos) in addtab()
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H A D | expand.c | 129 while (tp && col > tp->t_pos) in expand() 131 if (tp && col == tp->t_pos) { in expand() 137 while (col < tp->t_pos) { in expand()
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/dports/archivers/arj/arj-3.10.22/ |
H A D | exe_sear.c | 151 unsigned long t_pos; in fetch_block() local 160 t_pos=0L; in fetch_block() 163 fseek(stream, t_pos, SEEK_CUR); in fetch_block() 165 t_pos=fget_longword(stream); in fetch_block() 168 block_len=(int)min(sizeof(buf), t_pos); in fetch_block() 169 while(t_pos>0) in fetch_block() 176 t_pos-=(unsigned long)bytes_read; in fetch_block() 177 block_len=(int)min(sizeof(buf), t_pos); in fetch_block()
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/dports/math/snns/SNNSv4.3/tools/sources/ |
H A D | analyze.c | 93 int t_pos; in ClassNo() local 96 t_pos = 0; in ClassNo() 101 t_pos = i ; in ClassNo() 106 return t_pos; in ClassNo() 130 int o_pos, t_pos, on, off, i; in F_402040() local 136 t_pos = 0 ; in F_402040() 148 t_pos = i ; in F_402040() 154 if (t_max > 0.0 && o_pos == t_pos) in F_402040() 191 o_pos = t_pos = 0; in F_WTA() 208 t_pos = i ; in F_WTA() [all …]
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/dports/editors/texmacs/TeXmacs-1.99.4-src/src/System/Language/ |
H A D | packrat_parser.hpp | 45 void set_cursor (path t_pos); 75 inline packrat_parser (packrat_grammar gr, tree t, path t_pos= path ()); 80 (packrat_grammar gr, tree t, path t_pos): in packrat_parser() argument 83 rep->set_cursor (t_pos); } in packrat_parser()
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/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jaxp/src/com/sun/org/apache/bcel/internal/util/ |
H A D | BCELFactory.java | 296 int t_pos = bh.getTarget().getPosition(); in visitBranchInstruction() local 299 if(pos > t_pos) { in visitBranchInstruction() 300 target = "ih_" + t_pos; in visitBranchInstruction() 328 int t_pos = bh.getTarget().getPosition(); in updateBranchTargets() local 330 _out.println(" " + name + ".setTarget(ih_" + t_pos + ");"); in updateBranchTargets() 336 t_pos = ihs[j].getPosition(); in updateBranchTargets() 339 ", ih_" + t_pos + ");"); in updateBranchTargets()
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/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/jaxp/src/com/sun/org/apache/bcel/internal/util/ |
H A D | BCELFactory.java | 296 int t_pos = bh.getTarget().getPosition(); in visitBranchInstruction() local 299 if(pos > t_pos) { in visitBranchInstruction() 300 target = "ih_" + t_pos; in visitBranchInstruction() 328 int t_pos = bh.getTarget().getPosition(); in updateBranchTargets() local 330 _out.println(" " + name + ".setTarget(ih_" + t_pos + ");"); in updateBranchTargets() 336 t_pos = ihs[j].getPosition(); in updateBranchTargets() 339 ", ih_" + t_pos + ");"); in updateBranchTargets()
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/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/plot/ |
H A D | PositionalAsymmetryAlgorithm.java | 97 float[] t_pos = {0,0,0}; in getValues() local 134 ++t_pos[frame]; in getValues() 166 t_chi += (Math.pow((Math.abs(exp_t-t_pos[frame])-0.5),2))/exp_t; in getValues() 168 t_chi += (Math.pow((exp_t-t_pos[frame]),2))/exp_t; in getValues()
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/dports/games/arx-libertatis/arx-libertatis-1.1.2/src/graphics/data/ |
H A D | FTLFormat.h | 279 SavedVec3 t_pos; member 294 a.t_pos = t_pos; in CLOTHESVERTEX() 309 t_pos = b.t_pos;
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/dports/net/librdkafka/librdkafka-1.8.2/tests/ |
H A D | 0020-destroy_hang.c | 53 test_timing_t t_pos; in nonexist_part() local 91 TIMING_START(&t_pos, "COMMITTED"); in nonexist_part() 93 TIMING_STOP(&t_pos); in nonexist_part()
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/dports/sysutils/vector/vector-0.10.0/cargo-crates/rdkafka-sys-2.0.0+1.4.2/librdkafka/tests/ |
H A D | 0020-destroy_hang.c | 53 test_timing_t t_pos; in nonexist_part() local 91 TIMING_START(&t_pos, "COMMITTED"); in nonexist_part() 93 TIMING_STOP(&t_pos); in nonexist_part()
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/dports/sysutils/fluent-bit/fluent-bit-1.8.11/plugins/out_kafka/librdkafka-1.7.0/tests/ |
H A D | 0020-destroy_hang.c | 53 test_timing_t t_pos; in nonexist_part() local 91 TIMING_START(&t_pos, "COMMITTED"); in nonexist_part() 93 TIMING_STOP(&t_pos); in nonexist_part()
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/dports/comms/gnuradio/gnuradio-3.8.4.0/gr-fec/lib/ |
H A D | scl_list.cc | 112 int t_pos = d_list_size; in set_info_bit() local 113 while (!d_path_list[t_pos]->owns_vectors) { in set_info_bit() 114 t_pos++; in set_info_bit() 116 steal_vector_ownership(d_path_list[i], d_path_list[t_pos]); in set_info_bit()
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/lldb/source/Plugins/Process/FreeBSD/ |
H A D | ProcessFreeBSD.cpp | 134 for (tid_collection::const_iterator t_pos = m_run_tids.begin(), in DoResume() local 136 t_pos != t_end; ++t_pos) { in DoResume() 137 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 139 for (tid_collection::const_iterator t_pos = m_step_tids.begin(), in DoResume() local 141 t_pos != t_end; ++t_pos) { in DoResume() 142 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 145 Status error = SetupSoftwareSingleStepping(*t_pos); in DoResume() 150 for (tid_collection::const_iterator t_pos = m_suspend_tids.begin(), in DoResume() local 152 t_pos != t_end; ++t_pos) { in DoResume() 153 m_monitor->ThreadSuspend(*t_pos, true); in DoResume()
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/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/lldb/source/Plugins/Process/FreeBSD/ |
H A D | ProcessFreeBSD.cpp | 134 for (tid_collection::const_iterator t_pos = m_run_tids.begin(), in DoResume() local 136 t_pos != t_end; ++t_pos) { in DoResume() 137 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 139 for (tid_collection::const_iterator t_pos = m_step_tids.begin(), in DoResume() local 141 t_pos != t_end; ++t_pos) { in DoResume() 142 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 145 Status error = SetupSoftwareSingleStepping(*t_pos); in DoResume() 150 for (tid_collection::const_iterator t_pos = m_suspend_tids.begin(), in DoResume() local 152 t_pos != t_end; ++t_pos) { in DoResume() 153 m_monitor->ThreadSuspend(*t_pos, true); in DoResume()
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/dports/devel/llvm12/llvm-project-12.0.1.src/lldb/source/Plugins/Process/FreeBSD/ |
H A D | ProcessFreeBSD.cpp | 135 for (tid_collection::const_iterator t_pos = m_run_tids.begin(), in DoResume() local 137 t_pos != t_end; ++t_pos) { in DoResume() 138 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 140 for (tid_collection::const_iterator t_pos = m_step_tids.begin(), in DoResume() local 142 t_pos != t_end; ++t_pos) { in DoResume() 143 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 146 Status error = SetupSoftwareSingleStepping(*t_pos); in DoResume() 151 for (tid_collection::const_iterator t_pos = m_suspend_tids.begin(), in DoResume() local 153 t_pos != t_end; ++t_pos) { in DoResume() 154 m_monitor->ThreadSuspend(*t_pos, true); in DoResume()
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/dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/lldb/source/Plugins/Process/FreeBSD/ |
H A D | ProcessFreeBSD.cpp | 135 for (tid_collection::const_iterator t_pos = m_run_tids.begin(), in DoResume() local 137 t_pos != t_end; ++t_pos) { in DoResume() 138 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 140 for (tid_collection::const_iterator t_pos = m_step_tids.begin(), in DoResume() local 142 t_pos != t_end; ++t_pos) { in DoResume() 143 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 146 Status error = SetupSoftwareSingleStepping(*t_pos); in DoResume() 151 for (tid_collection::const_iterator t_pos = m_suspend_tids.begin(), in DoResume() local 153 t_pos != t_end; ++t_pos) { in DoResume() 154 m_monitor->ThreadSuspend(*t_pos, true); in DoResume()
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/dports/devel/tinygo/tinygo-0.14.1/llvm-project/lldb/source/Plugins/Process/FreeBSD/ |
H A D | ProcessFreeBSD.cpp | 133 for (tid_collection::const_iterator t_pos = m_run_tids.begin(), in DoResume() local 135 t_pos != t_end; ++t_pos) { in DoResume() 136 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 138 for (tid_collection::const_iterator t_pos = m_step_tids.begin(), in DoResume() local 140 t_pos != t_end; ++t_pos) { in DoResume() 141 m_monitor->ThreadSuspend(*t_pos, false); in DoResume() 144 Status error = SetupSoftwareSingleStepping(*t_pos); in DoResume() 149 for (tid_collection::const_iterator t_pos = m_suspend_tids.begin(), in DoResume() local 151 t_pos != t_end; ++t_pos) { in DoResume() 152 m_monitor->ThreadSuspend(*t_pos, true); in DoResume()
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/dports/science/nest/nest-simulator-3.1/testsuite/pytests/test_spatial/ |
H A D | test_SynapseCollection_distance.py | 40 t_pos = nest.GetPosition(t_nodes) 49 x_ref = t_pos[t_nodes.index(t)][0] - s_pos[s_nodes.index(s)][0] 50 y_ref = t_pos[t_nodes.index(t)][1] - s_pos[s_nodes.index(s)][1] 53 z_ref = t_pos[t_nodes.index(t)][2] - s_pos[s_nodes.index(s)][2]
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/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | mconsist.c | 30 Int4 a_pos, t_pos; in get_anchor_coordinates() local 79 t_pos = -1; in get_anchor_coordinates() 84 t_pos = (SeqLocStart(slp) + SeqLocStop(slp))/2; in get_anchor_coordinates() 90 if(t_pos >= 0 && a_pos >=0) in get_anchor_coordinates() 93 pos[n] = t_pos; in get_anchor_coordinates()
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/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/java.xml/share/classes/com/sun/org/apache/bcel/internal/util/ |
H A D | BCELFactory.java | 297 final int t_pos = bh.getTarget().getPosition(); in visitBranchInstruction() local 299 if (pos > t_pos) { in visitBranchInstruction() 300 target = "ih_" + t_pos; in visitBranchInstruction() 328 int t_pos = bh.getTarget().getPosition(); in updateBranchTargets() local 329 _out.println(" " + name + ".setTarget(ih_" + t_pos + ");"); in updateBranchTargets() 333 t_pos = ihs[j].getPosition(); in updateBranchTargets() 334 _out.println(" " + name + ".setTarget(" + j + ", ih_" + t_pos + ");"); in updateBranchTargets()
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