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Searched refs:t_slp (Results 1 – 7 of 7) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/api/
H A Dmconsist.c236 SeqLocPtr t_slp; in MapLocToAnchor() local
266 t_slp = SeqLocIntNew(start, stop, Seq_strand_plus, anchor_id); in MapLocToAnchor()
272 t_slp = SeqLocPntNew(start, Seq_strand_plus, anchor_id, FALSE); in MapLocToAnchor()
276 return t_slp; in MapLocToAnchor()
H A Dsalpedit.c3939 SeqLocPtr slp, t_slp, n_slp; in reverse_seqloc() local
3946 t_slp = NULL; in reverse_seqloc()
3954 if(t_slp == NULL) in reverse_seqloc()
3955 t_slp = n_slp; in reverse_seqloc()
3958 n_slp->next = t_slp; in reverse_seqloc()
3959 t_slp = n_slp; in reverse_seqloc()
4020 SeqLocPtr t_slp, h_slp; in dup_mul_locs() local
4038 t_slp = ValNodeNew(NULL); in dup_mul_locs()
4041 return t_slp; in dup_mul_locs()
4171 t_slp = ValNodeNew(NULL); in build_slp_for_gcontig()
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H A Dgather.c2068 SeqLocPtr t_slp; in is_fuzz_loc() local
2072 t_slp = NULL; in is_fuzz_loc()
2073 while((t_slp = SeqLocFindNext(slp, t_slp)) != NULL) in is_fuzz_loc()
2075 if(t_slp->choice == SEQLOC_INT) in is_fuzz_loc()
2077 sint = t_slp->data.ptrvalue; in is_fuzz_loc()
2081 else if(t_slp->choice == SEQLOC_PNT) in is_fuzz_loc()
2083 spp = t_slp->data.ptrvalue; in is_fuzz_loc()
H A Dtxalign.c1717 SeqLocPtr slp, t_slp; in translate_faked_cds() local
1776 t_slp = SeqLocIntNew(m_start, m_stop, Seq_strand_plus, SeqLocId(slp)); in translate_faked_cds()
1777 print_protein_for_cds(fake_cds, buf+l_pos, t_slp, TRUE); in translate_faked_cds()
1779 SeqLocFree(t_slp); in translate_faked_cds()
/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Dprtgene.c931 SeqLocPtr t_slp; in PrintSequenceToFile() local
1004 t_slp = bsp->seq_ext; in PrintSequenceToFile()
1008 while(t_slp) in PrintSequenceToFile()
1010 if(SeqLocId(t_slp) != NULL) in PrintSequenceToFile()
1011 print_store_seqid(SeqLocId(t_slp), buf, buf_size, &len, fp, is_html, &index, first); in PrintSequenceToFile()
1013 t_slp = t_slp->next; in PrintSequenceToFile()
H A Ddrawseq.c4767 SeqLocPtr slp, t_slp; in DrawCytoContigMap() local
4891 t_slp = SeqLocIntNew(SeqLocStart(slp), SeqLocStop(slp), in DrawCytoContigMap()
4893 sint = t_slp->data.ptrvalue; in DrawCytoContigMap()
4910 aligns = collect_anpnode_with_option(&ca_option, t_slp, entityID, in DrawCytoContigMap()
4916 list = FindContigList(t_slp); in DrawCytoContigMap()
4923 SeqLocFree(t_slp); in DrawCytoContigMap()
H A Dmapgene.c79 SeqLocPtr slp, match_slp, t_slp; in load_new_align() local
153 t_slp = SeqLocIntNew(SeqLocStart(slp), SeqLocStop(slp), SeqLocStrand(slp), sip); in load_new_align()
154 add_figure_site(m_msp, m_fsp->m_left, m_fsp->m_right, t_slp); in load_new_align()