Searched refs:t_slp (Results 1 – 7 of 7) sorted by relevance
/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | mconsist.c | 236 SeqLocPtr t_slp; in MapLocToAnchor() local 266 t_slp = SeqLocIntNew(start, stop, Seq_strand_plus, anchor_id); in MapLocToAnchor() 272 t_slp = SeqLocPntNew(start, Seq_strand_plus, anchor_id, FALSE); in MapLocToAnchor() 276 return t_slp; in MapLocToAnchor()
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H A D | salpedit.c | 3939 SeqLocPtr slp, t_slp, n_slp; in reverse_seqloc() local 3946 t_slp = NULL; in reverse_seqloc() 3954 if(t_slp == NULL) in reverse_seqloc() 3955 t_slp = n_slp; in reverse_seqloc() 3958 n_slp->next = t_slp; in reverse_seqloc() 3959 t_slp = n_slp; in reverse_seqloc() 4020 SeqLocPtr t_slp, h_slp; in dup_mul_locs() local 4038 t_slp = ValNodeNew(NULL); in dup_mul_locs() 4041 return t_slp; in dup_mul_locs() 4171 t_slp = ValNodeNew(NULL); in build_slp_for_gcontig() [all …]
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H A D | gather.c | 2068 SeqLocPtr t_slp; in is_fuzz_loc() local 2072 t_slp = NULL; in is_fuzz_loc() 2073 while((t_slp = SeqLocFindNext(slp, t_slp)) != NULL) in is_fuzz_loc() 2075 if(t_slp->choice == SEQLOC_INT) in is_fuzz_loc() 2077 sint = t_slp->data.ptrvalue; in is_fuzz_loc() 2081 else if(t_slp->choice == SEQLOC_PNT) in is_fuzz_loc() 2083 spp = t_slp->data.ptrvalue; in is_fuzz_loc()
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H A D | txalign.c | 1717 SeqLocPtr slp, t_slp; in translate_faked_cds() local 1776 t_slp = SeqLocIntNew(m_start, m_stop, Seq_strand_plus, SeqLocId(slp)); in translate_faked_cds() 1777 print_protein_for_cds(fake_cds, buf+l_pos, t_slp, TRUE); in translate_faked_cds() 1779 SeqLocFree(t_slp); in translate_faked_cds()
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/dports/biology/ncbi-toolkit/ncbi/desktop/ |
H A D | prtgene.c | 931 SeqLocPtr t_slp; in PrintSequenceToFile() local 1004 t_slp = bsp->seq_ext; in PrintSequenceToFile() 1008 while(t_slp) in PrintSequenceToFile() 1010 if(SeqLocId(t_slp) != NULL) in PrintSequenceToFile() 1011 print_store_seqid(SeqLocId(t_slp), buf, buf_size, &len, fp, is_html, &index, first); in PrintSequenceToFile() 1013 t_slp = t_slp->next; in PrintSequenceToFile()
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H A D | drawseq.c | 4767 SeqLocPtr slp, t_slp; in DrawCytoContigMap() local 4891 t_slp = SeqLocIntNew(SeqLocStart(slp), SeqLocStop(slp), in DrawCytoContigMap() 4893 sint = t_slp->data.ptrvalue; in DrawCytoContigMap() 4910 aligns = collect_anpnode_with_option(&ca_option, t_slp, entityID, in DrawCytoContigMap() 4916 list = FindContigList(t_slp); in DrawCytoContigMap() 4923 SeqLocFree(t_slp); in DrawCytoContigMap()
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H A D | mapgene.c | 79 SeqLocPtr slp, match_slp, t_slp; in load_new_align() local 153 t_slp = SeqLocIntNew(SeqLocStart(slp), SeqLocStop(slp), SeqLocStrand(slp), sip); in load_new_align() 154 add_figure_site(m_msp, m_fsp->m_left, m_fsp->m_right, t_slp); in load_new_align()
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