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/dports/biology/infernal/infernal-1.1.3/rmark/
H A Drmark-idpositives.pl51 $target_from = $fields[3];
62 $target_to = $target_from;
63 $target_from = $tmp;
72 $pos_idx_HH{$target_name}{$target_from} = $idx;
134 $target_from = $fields[2];
140 $target_to = $target_from;
141 $target_from = $tmp;
163 push(@khit_fromA, $target_from);
196 $target_from = $fields[2];
201 $target_to = $target_from;
[all …]
H A Dx-nhmmer2cmsearch163 $target_from = $fields[6];
170 if($target_from > $target_to) { # reverse direction
174 $tmp = $target_from; $target_from = $target_to; $target_to = $tmp;
177 $tmp = $target_from;
178 $target_from = $target_to - $W + 1;
181 if($target_from < 1) { $target_from = 1; }
185 $tmp = $target_from; $target_from = $target_to; $target_to = $tmp;
187 …printf SFETCHIN ("%s/%d-%d %d %d %s\n", $target, $target_from, $target_to, $target_from, $target_t…
221 $target_from = $fields[2];
235 $target_from += ($offset1-1);
[all …]
H A Dx-wublast117 $target_from = $fields[20];
121 …if($target_from > $target_to) { die "ERROR: WUBLAST output unexpectedly has target_from > target_t…
145 if($target_from2 < $target_from) { $target_from = $target_from2; }
152 $tmp = $target_from;
153 $target_from = $target_to;
158 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t…
H A Drmark-multiply-evalues.pl9 …($pval, $bitscore, $target_from, $target_to, $target, $msaname, $matching_fam_idx, $matching_stra…
13 …printf("%10g %10.1f %10d %10d %20s %35s %s %s\n", $pval, $bitscore, $target_from, $target_to, $tar…
H A Dx-cmsearch230 $target_from = $fields[2];
234 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t…
243 $target_from = $fields[7];
247 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t…
H A Dx-blastall101 $target_from = $fields[8];
105 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $eval, $bitscore, $target_from, $target_to,…
H A Dx-blastn101 $target_from = $fields[8];
105 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t…
H A Dx-rfamscan245 $target_from = $fields[2];
259 $target_from += ($offset1-1);
263 $target_from = $offset1 - $target_from + 1;
267 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $pval, $bitscore, $target_from, $target_to,…
H A Dx-nhmmer120 $target_from = $fields[6];
124 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $pval, $bitscore, $target_from, $target_to,…
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/read_blast_result/
H A Dmissing.cpp348 int CReadBlastApp::sequence_proximity(const int target_from, const int target_to, in sequence_proximity() argument
352 int range_scale = target_to - target_from; in sequence_proximity()
354 return sequence_proximity(target_from, target_to, from, to, key, max_distance); in sequence_proximity()
368 int CReadBlastApp::sequence_proximity(const int target_from, const int target_to, in sequence_proximity() argument
371 if(to < target_from - max_distance ) return -1; in sequence_proximity()
H A Dread_blast_result.hpp415 static int sequence_proximity(const int target_from, const int target_to,
417 static int sequence_proximity(const int target_from, const int target_to,
/dports/biology/ncbi-toolkit/ncbi/api/
H A Dtxalign.h363 Int4 target_from; /* from for target sequence */ member
396 Int4 target_from; /* from for target sequence */ member
H A Dtxalign.c1934 asp->target_from = si.from; in load_align_sum_for_DenseDiag()
2031 asp->target_from = tsi.from; in load_align_sum_for_DenseSeg()
2251 asp->target_from = SeqLocStop(ssp->loc->next); in load_align_sum_for_StdSeg()
2253 asp->target_from = SeqLocStart(ssp->loc->next); in load_align_sum_for_StdSeg()
3277 aso.target_from = asp->target_from; in ShowAlignNodeText2Ex()
4858 asop->target_from = as.target_from; in FormatScoreFromSeqAlignEx()
5353 t_to = asop->target_from+1; in FormatScoreFunc()
5355 t_from = asop->target_from+1; in FormatScoreFunc()
5539 Int4 master_from, target_from, master_to, target_to; in GetMaxFROMDigits() local
5543 target_from = SeqLocStart(sseg->loc->next); in GetMaxFROMDigits()
[all …]
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dxmlblast.c755 hsp->hit_from = as.target_from; in BXMLGetHspFromSeqAlign()
779 hsp->hit_to = as.target_from; in BXMLGetHspFromSeqAlign()
/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp829 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
H A Dc1_LinearScan.cpp6182 void ControlFlowOptimizer::substitute_branch_target(BlockBegin* block, BlockBegin* target_from, Blo… in substitute_branch_target() argument
6183 …nt_cr("Deleting empty block: substituting from B%d to B%d inside B%d", target_from->block_id(), ta… in substitute_branch_target()
6195 if (branch->block() == target_from) { in substitute_branch_target()
6198 if (branch->ublock() == target_from) { in substitute_branch_target()
/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp827 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp829 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp846 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp848 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp833 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp827 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/hotspot/share/c1/
H A Dc1_LinearScan.hpp827 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/hotspot/src/share/vm/c1/
H A Dc1_LinearScan.hpp843 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/hotspot/src/share/vm/c1/
H A Dc1_LinearScan.hpp843 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);

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