/dports/biology/infernal/infernal-1.1.3/rmark/ |
H A D | rmark-idpositives.pl | 51 $target_from = $fields[3]; 62 $target_to = $target_from; 63 $target_from = $tmp; 72 $pos_idx_HH{$target_name}{$target_from} = $idx; 134 $target_from = $fields[2]; 140 $target_to = $target_from; 141 $target_from = $tmp; 163 push(@khit_fromA, $target_from); 196 $target_from = $fields[2]; 201 $target_to = $target_from; [all …]
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H A D | x-nhmmer2cmsearch | 163 $target_from = $fields[6]; 170 if($target_from > $target_to) { # reverse direction 174 $tmp = $target_from; $target_from = $target_to; $target_to = $tmp; 177 $tmp = $target_from; 178 $target_from = $target_to - $W + 1; 181 if($target_from < 1) { $target_from = 1; } 185 $tmp = $target_from; $target_from = $target_to; $target_to = $tmp; 187 …printf SFETCHIN ("%s/%d-%d %d %d %s\n", $target, $target_from, $target_to, $target_from, $target_t… 221 $target_from = $fields[2]; 235 $target_from += ($offset1-1); [all …]
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H A D | x-wublast | 117 $target_from = $fields[20]; 121 …if($target_from > $target_to) { die "ERROR: WUBLAST output unexpectedly has target_from > target_t… 145 if($target_from2 < $target_from) { $target_from = $target_from2; } 152 $tmp = $target_from; 153 $target_from = $target_to; 158 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t…
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H A D | rmark-multiply-evalues.pl | 9 …($pval, $bitscore, $target_from, $target_to, $target, $msaname, $matching_fam_idx, $matching_stra… 13 …printf("%10g %10.1f %10d %10d %20s %35s %s %s\n", $pval, $bitscore, $target_from, $target_to, $tar…
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H A D | x-cmsearch | 230 $target_from = $fields[2]; 234 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t… 243 $target_from = $fields[7]; 247 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t…
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H A D | x-blastall | 101 $target_from = $fields[8]; 105 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $eval, $bitscore, $target_from, $target_to,…
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H A D | x-blastn | 101 $target_from = $fields[8]; 105 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $evalue, $bitscore, $target_from, $target_t…
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H A D | x-rfamscan | 245 $target_from = $fields[2]; 259 $target_from += ($offset1-1); 263 $target_from = $offset1 - $target_from + 1; 267 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $pval, $bitscore, $target_from, $target_to,…
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H A D | x-nhmmer | 120 $target_from = $fields[6]; 124 …printf TMPOUTFILE "%10g %10.1f %10d %10d %20s %35s\n", $pval, $bitscore, $target_from, $target_to,…
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/read_blast_result/ |
H A D | missing.cpp | 348 int CReadBlastApp::sequence_proximity(const int target_from, const int target_to, in sequence_proximity() argument 352 int range_scale = target_to - target_from; in sequence_proximity() 354 return sequence_proximity(target_from, target_to, from, to, key, max_distance); in sequence_proximity() 368 int CReadBlastApp::sequence_proximity(const int target_from, const int target_to, in sequence_proximity() argument 371 if(to < target_from - max_distance ) return -1; in sequence_proximity()
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H A D | read_blast_result.hpp | 415 static int sequence_proximity(const int target_from, const int target_to, 417 static int sequence_proximity(const int target_from, const int target_to,
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/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | txalign.h | 363 Int4 target_from; /* from for target sequence */ member 396 Int4 target_from; /* from for target sequence */ member
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H A D | txalign.c | 1934 asp->target_from = si.from; in load_align_sum_for_DenseDiag() 2031 asp->target_from = tsi.from; in load_align_sum_for_DenseSeg() 2251 asp->target_from = SeqLocStop(ssp->loc->next); in load_align_sum_for_StdSeg() 2253 asp->target_from = SeqLocStart(ssp->loc->next); in load_align_sum_for_StdSeg() 3277 aso.target_from = asp->target_from; in ShowAlignNodeText2Ex() 4858 asop->target_from = as.target_from; in FormatScoreFromSeqAlignEx() 5353 t_to = asop->target_from+1; in FormatScoreFunc() 5355 t_from = asop->target_from+1; in FormatScoreFunc() 5539 Int4 master_from, target_from, master_to, target_to; in GetMaxFROMDigits() local 5543 target_from = SeqLocStart(sseg->loc->next); in GetMaxFROMDigits() [all …]
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | xmlblast.c | 755 hsp->hit_from = as.target_from; in BXMLGetHspFromSeqAlign() 779 hsp->hit_to = as.target_from; in BXMLGetHspFromSeqAlign()
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/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 829 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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H A D | c1_LinearScan.cpp | 6182 void ControlFlowOptimizer::substitute_branch_target(BlockBegin* block, BlockBegin* target_from, Blo… in substitute_branch_target() argument 6183 …nt_cr("Deleting empty block: substituting from B%d to B%d inside B%d", target_from->block_id(), ta… in substitute_branch_target() 6195 if (branch->block() == target_from) { in substitute_branch_target() 6198 if (branch->ublock() == target_from) { in substitute_branch_target()
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/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 827 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 829 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 846 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 848 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 833 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 827 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/hotspot/share/c1/ |
H A D | c1_LinearScan.hpp | 827 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk8/jdk8u-jdk8u312-b07.1/hotspot/src/share/vm/c1/ |
H A D | c1_LinearScan.hpp | 843 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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/dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/hotspot/src/share/vm/c1/ |
H A D | c1_LinearScan.hpp | 843 void substitute_branch_target(BlockBegin* cur, BlockBegin* target_from, BlockBegin* target_to);
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