/dports/misc/rump/buildrump.sh-b914579/src/sys/external/bsd/drm2/dist/drm/radeon/ |
H A D | radeon_fence.c | 329 while (!radeon_fence_any_seq_signaled(rdev, target_seq)) { in radeon_fence_wait_seq() 333 if (!target_seq[i]) in radeon_fence_wait_seq() 337 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq() 346 target_seq)) in radeon_fence_wait_seq() 352 target_seq)) in radeon_fence_wait_seq() 357 (signaled = radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq() 367 if (!target_seq[i]) in radeon_fence_wait_seq() 371 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq() 389 if (!target_seq[i]) in radeon_fence_wait_seq() 400 if (!target_seq[i]) in radeon_fence_wait_seq() [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Seq/ |
H A D | PrimedSeq.pm | 383 my $target_seq = uc $self->{seq}->seq(); 388 my ($before, $middle, $after) = ($target_seq =~ /^(.*)$left_seq(.*)$right_seq(.*)$/); 390 if ($target_seq !~ /$left_seq/) { 393 if ($target_seq !~ /$right_seq/) { 400 my $right_location = length($target_seq) - length($after);
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/dports/math/py-keras/Keras-2.4.3/examples/ |
H A D | lstm_seq2seq_restore.py | 111 target_seq = np.zeros((1, 1, num_decoder_tokens)) 113 target_seq[0, 0, target_token_index['\t']] = 1. 121 [target_seq] + states_value) 135 target_seq = np.zeros((1, 1, num_decoder_tokens)) 136 target_seq[0, 0, sampled_token_index] = 1.
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H A D | lstm_seq2seq.py | 194 target_seq = np.zeros((1, 1, num_decoder_tokens)) 196 target_seq[0, 0, target_token_index['\t']] = 1. 204 [target_seq] + states_value) 218 target_seq = np.zeros((1, 1, num_decoder_tokens)) 219 target_seq[0, 0, sampled_token_index] = 1.
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/dports/science/mpqc/mpqc-2.3.1/src/lib/util/group/ |
H A D | messint.cc | 54 delete[] target_seq; in ~intMessageGrp() 64 target_seq = new int[n]; in initialize() 67 target_seq[i] = 0; in initialize() 124 int& seq = target_seq[target]; in raw_send()
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/dports/biology/vsearch/vsearch-2.17.1/src/ |
H A D | msa.cc | 194 char * target_seq = db_getsequence(target_seqno); in msa() local 200 reverse_complement(rc_buffer, target_seq, in msa() 202 target_seq = rc_buffer; in msa() 218 msa_add(target_seq[tpos++], target_abundance); in msa() 239 msa_add(target_seq[tpos++], target_abundance); in msa() 260 msa_add(target_seq[tpos++], target_abundance); in msa()
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/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/PWM/__deprecated/ |
H A D | score_atgPWM.pl | 96 my $target_seq = substr($sequence, $start_pos - $target_prefix_length, $pwm_length); 98 unless (length($target_seq) == $pwm_length) { next; } # need to skip it 100 my $motif_score = $pwm_obj->score_pwm($target_seq, $base_freqs_href, 'mask' => \@mask);
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/dports/biology/py-hits/hits-0.1/hits/ |
H A D | sw_cython.pyx | 186 def extend_perfect_seed(char* query_seq, char* target_seq, int query_start, int query_end, int targ… argument 187 …while query_start > 0 and target_start > 0 and (query_seq[query_start - 1] == target_seq[target_st… 191 …le query_end < len(query_seq) and target_end < len(target_seq) and (query_seq[query_end] == target… 197 def extend_perfect_seed_with_one_nt_deletion(char* query_seq, char* target_seq, int query_start, in… argument 203 …while query_start > 0 and target_start > 0 and (query_seq[query_start - 1] == target_seq[target_st… 210 …le query_end < len(query_seq) and target_end < len(target_seq) and (query_seq[query_end] == target…
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
H A D | seq_loc_mapper.cpp | 250 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument 254 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper() 256 CConstRef<CSeq_id> top_level_id = target_seq.GetSeqId(); in CSeq_loc_Mapper() 259 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper() 264 x_InitializeSeqMap(target_seq.GetSeqMap(), in CSeq_loc_Mapper() 292 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument 297 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper() 299 CConstRef<CSeq_id> top_id = target_seq.GetSeqId(); in CSeq_loc_Mapper() 302 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper() 307 selector.SetLinkUsedTSE(target_seq.GetTSE_Handle()); in CSeq_loc_Mapper() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
H A D | seq_loc_mapper.cpp | 250 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument 254 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper() 256 CConstRef<CSeq_id> top_level_id = target_seq.GetSeqId(); in CSeq_loc_Mapper() 259 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper() 264 x_InitializeSeqMap(target_seq.GetSeqMap(), in CSeq_loc_Mapper() 292 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument 297 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper() 299 CConstRef<CSeq_id> top_id = target_seq.GetSeqId(); in CSeq_loc_Mapper() 302 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper() 307 selector.SetLinkUsedTSE(target_seq.GetTSE_Handle()); in CSeq_loc_Mapper() [all …]
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/dports/net/freeswitch/freeswitch-1.10.3.-release/src/ |
H A D | switch_jitterbuffer.c | 67 uint16_t target_seq; member 732 jb->last_target_seq = jb->target_seq; in increment_seq() 733 jb->target_seq = htons((ntohs(jb->target_seq) + 1)); in increment_seq() 739 jb->target_seq = htons((ntohs(jb->last_target_seq) + 1)); in set_read_seq() 752 jb->target_seq = 0; in jb_next_packet_by_seq() 760 if (!jb->target_seq) { in jb_next_packet_by_seq() 762 jb_debug(jb, 2, "FOUND rollover seq: %u\n", ntohs(jb->target_seq)); in jb_next_packet_by_seq() 770 jb_debug(jb, 2, "FOUND desired seq: %u\n", ntohs(jb->target_seq)); in jb_next_packet_by_seq() 956 jb->target_seq = 0; in switch_jb_reset() 1181 if (seq < ntohs(jb->target_seq) - jb->frame_len) { in switch_jb_pop_nack() [all …]
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/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/gpu/drm/radeon/ |
H A D | radeon_fence.c | 494 u64 *target_seq, bool intr, in radeon_fence_wait_seq_timeout() argument 500 if (radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq_timeout() 505 if (!target_seq[i]) in radeon_fence_wait_seq_timeout() 508 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout() 514 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout() 518 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout() 526 if (!target_seq[i]) in radeon_fence_wait_seq_timeout() 530 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
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/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/gpu/drm/radeon/ |
H A D | radeon_fence.c | 494 u64 *target_seq, bool intr, in radeon_fence_wait_seq_timeout() argument 500 if (radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq_timeout() 505 if (!target_seq[i]) in radeon_fence_wait_seq_timeout() 508 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout() 514 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout() 518 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout() 526 if (!target_seq[i]) in radeon_fence_wait_seq_timeout() 530 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
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/dports/multimedia/libv4l/linux-5.13-rc2/drivers/gpu/drm/radeon/ |
H A D | radeon_fence.c | 494 u64 *target_seq, bool intr, in radeon_fence_wait_seq_timeout() argument 500 if (radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq_timeout() 505 if (!target_seq[i]) in radeon_fence_wait_seq_timeout() 508 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout() 514 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout() 518 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout() 526 if (!target_seq[i]) in radeon_fence_wait_seq_timeout() 530 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
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/dports/biology/exonerate/exonerate-2.4.0/src/model/ |
H A D | est2genome.test.c | 29 *target_seq = in Argument_main() local 44 target_seq, 0, Sequence_Strand_UNKNOWN, in Argument_main()
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/dports/net-im/py-matrix-synapse/synapse-1.50.2/synapse/storage/databases/main/ |
H A D | events.py | 772 for target_id, target_seq in chain_links.get_links_from( 790 "target_sequence_number": target_seq, 796 target_seq, 2261 target_chain, target_seq = target_tuple 2296 current_links[src_seq] = target_seq 2309 for link_src_seq, target_seq in sequence_numbers.items(): 2311 yield target_id, target_seq 2333 if target_seq is not None: 2334 yield (src_chain, src_seq, target_chain, target_seq) 2345 target_chain, target_seq = target_tuple [all …]
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/dports/misc/tvm/incubator-tvm-0.6.1/nnvm/tutorials/nlp/ |
H A D | keras_s2s_translate.py | 209 target_seq = np.zeros((1, 1, num_decoder_tokens), dtype='float32') 211 target_seq[0, 0, sampled_token_index] = 1. 214 tvm_dec.set_input('input_2', target_seq)
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/dports/misc/py-tvm/incubator-tvm-0.6.1/nnvm/tutorials/nlp/ |
H A D | keras_s2s_translate.py | 209 target_seq = np.zeros((1, 1, num_decoder_tokens), dtype='float32') 211 target_seq[0, 0, sampled_token_index] = 1. 214 tvm_dec.set_input('input_2', target_seq)
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/dports/biology/diamond/diamond-2.0.13/src/stats/ |
H A D | cbs.cpp | 96 vector<Letter> target_seq = target.copy(); in TargetMatrix() local 100 auto c = composition(Sequence(target_seq.data(), target_seq.size())); in TargetMatrix()
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/dports/devel/omniORB/omniORB-4.2.4/src/lib/omniORB/ziop/ |
H A D | omniZIOP.cc | 548 Compression::Buffer target_seq(z_data_len, z_data_len, z_data); in compressBuffer() local 552 pd_compressors[0]->compress(source_seq, target_seq); in compressBuffer() 569 if (target_seq.NP_data() != z_data) { in compressBuffer() 576 z_data_len = target_seq.length(); in compressBuffer() 671 Compression::Buffer target_seq(g_data_len, g_data_len, g_data); in decompressBuffer() local 685 pd_compressors[compressor_index]->decompress(source_seq, target_seq); in decompressBuffer() 704 if (target_seq.NP_data() != g_data) { in decompressBuffer() 712 if (target_seq.length() != g_data_len) { in decompressBuffer() 715 log << "ZIOP message decompressed to " << target_seq.length() in decompressBuffer() 718 g_data_len = target_seq.length(); in decompressBuffer()
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/dports/biology/diamond/diamond-2.0.13/src/align/global_ranking/ |
H A D | table.cpp | 86 …atArray<Extension::SeedHit>::Iterator end, const Sequence* query_seq, const Sequence& target_seq) { in target_score() argument 99 Diagonal_segment d = xdrop_ungapped(query_seq[begin->frame], target_seq, begin->i, begin->j); in target_score() 105 d = xdrop_ungapped(query_seq[i->frame], target_seq, i->i, i->j); in target_score()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
H A D | seq_loc_mapper.hpp | 149 CSeq_loc_Mapper(CBioseq_Handle target_seq, 161 CSeq_loc_Mapper(CBioseq_Handle target_seq,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
H A D | seq_loc_mapper.hpp | 149 CSeq_loc_Mapper(CBioseq_Handle target_seq, 161 CSeq_loc_Mapper(CBioseq_Handle target_seq,
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/dports/biology/diamond/diamond-2.0.13/src/dp/swipe/ |
H A D | full_swipe.h | 57 out.target_seq = target.seq; in traceback() 157 const _sv target_seq(target_seq_vector); in swipe() 173 … open_penalty, hgap, vgap, col_best, it.trace_mask(), row_counter, IdMask(p.query[i], target_seq)); in swipe()
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H A D | banded_swipe.h | 115 out.target_seq = target.seq; in traceback() 131 out.target_seq = target.seq; in traceback() 247 const _sv target_seq = _sv(target_seqv); in swipe() local 280 … open_penalty, hgap, vgap, col_best, it.trace_mask(), row_counter, IdMask(p.query[i], target_seq)); in swipe()
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