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Searched refs:target_seq (Results 1 – 25 of 44) sorted by relevance

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/dports/misc/rump/buildrump.sh-b914579/src/sys/external/bsd/drm2/dist/drm/radeon/
H A Dradeon_fence.c329 while (!radeon_fence_any_seq_signaled(rdev, target_seq)) { in radeon_fence_wait_seq()
333 if (!target_seq[i]) in radeon_fence_wait_seq()
337 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq()
346 target_seq)) in radeon_fence_wait_seq()
352 target_seq)) in radeon_fence_wait_seq()
357 (signaled = radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq()
367 if (!target_seq[i]) in radeon_fence_wait_seq()
371 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq()
389 if (!target_seq[i]) in radeon_fence_wait_seq()
400 if (!target_seq[i]) in radeon_fence_wait_seq()
[all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Seq/
H A DPrimedSeq.pm383 my $target_seq = uc $self->{seq}->seq();
388 my ($before, $middle, $after) = ($target_seq =~ /^(.*)$left_seq(.*)$right_seq(.*)$/);
390 if ($target_seq !~ /$left_seq/) {
393 if ($target_seq !~ /$right_seq/) {
400 my $right_location = length($target_seq) - length($after);
/dports/math/py-keras/Keras-2.4.3/examples/
H A Dlstm_seq2seq_restore.py111 target_seq = np.zeros((1, 1, num_decoder_tokens))
113 target_seq[0, 0, target_token_index['\t']] = 1.
121 [target_seq] + states_value)
135 target_seq = np.zeros((1, 1, num_decoder_tokens))
136 target_seq[0, 0, sampled_token_index] = 1.
H A Dlstm_seq2seq.py194 target_seq = np.zeros((1, 1, num_decoder_tokens))
196 target_seq[0, 0, target_token_index['\t']] = 1.
204 [target_seq] + states_value)
218 target_seq = np.zeros((1, 1, num_decoder_tokens))
219 target_seq[0, 0, sampled_token_index] = 1.
/dports/science/mpqc/mpqc-2.3.1/src/lib/util/group/
H A Dmessint.cc54 delete[] target_seq; in ~intMessageGrp()
64 target_seq = new int[n]; in initialize()
67 target_seq[i] = 0; in initialize()
124 int& seq = target_seq[target]; in raw_send()
/dports/biology/vsearch/vsearch-2.17.1/src/
H A Dmsa.cc194 char * target_seq = db_getsequence(target_seqno); in msa() local
200 reverse_complement(rc_buffer, target_seq, in msa()
202 target_seq = rc_buffer; in msa()
218 msa_add(target_seq[tpos++], target_abundance); in msa()
239 msa_add(target_seq[tpos++], target_abundance); in msa()
260 msa_add(target_seq[tpos++], target_abundance); in msa()
/dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/util/PWM/__deprecated/
H A Dscore_atgPWM.pl96 my $target_seq = substr($sequence, $start_pos - $target_prefix_length, $pwm_length);
98 unless (length($target_seq) == $pwm_length) { next; } # need to skip it
100 my $motif_score = $pwm_obj->score_pwm($target_seq, $base_freqs_href, 'mask' => \@mask);
/dports/biology/py-hits/hits-0.1/hits/
H A Dsw_cython.pyx186 def extend_perfect_seed(char* query_seq, char* target_seq, int query_start, int query_end, int targ… argument
187 …while query_start > 0 and target_start > 0 and (query_seq[query_start - 1] == target_seq[target_st…
191 …le query_end < len(query_seq) and target_end < len(target_seq) and (query_seq[query_end] == target…
197 def extend_perfect_seed_with_one_nt_deletion(char* query_seq, char* target_seq, int query_start, in… argument
203 …while query_start > 0 and target_start > 0 and (query_seq[query_start - 1] == target_seq[target_st…
210 …le query_end < len(query_seq) and target_end < len(target_seq) and (query_seq[query_end] == target…
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/
H A Dseq_loc_mapper.cpp250 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument
254 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper()
256 CConstRef<CSeq_id> top_level_id = target_seq.GetSeqId(); in CSeq_loc_Mapper()
259 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper()
264 x_InitializeSeqMap(target_seq.GetSeqMap(), in CSeq_loc_Mapper()
292 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument
297 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper()
299 CConstRef<CSeq_id> top_id = target_seq.GetSeqId(); in CSeq_loc_Mapper()
302 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper()
307 selector.SetLinkUsedTSE(target_seq.GetTSE_Handle()); in CSeq_loc_Mapper()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/
H A Dseq_loc_mapper.cpp250 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument
254 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper()
256 CConstRef<CSeq_id> top_level_id = target_seq.GetSeqId(); in CSeq_loc_Mapper()
259 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper()
264 x_InitializeSeqMap(target_seq.GetSeqMap(), in CSeq_loc_Mapper()
292 CSeq_loc_Mapper::CSeq_loc_Mapper(CBioseq_Handle target_seq, in CSeq_loc_Mapper() argument
297 m_Scope(&target_seq.GetScope()) in CSeq_loc_Mapper()
299 CConstRef<CSeq_id> top_id = target_seq.GetSeqId(); in CSeq_loc_Mapper()
302 CConstRef<CSynonymsSet> syns = target_seq.GetSynonyms(); in CSeq_loc_Mapper()
307 selector.SetLinkUsedTSE(target_seq.GetTSE_Handle()); in CSeq_loc_Mapper()
[all …]
/dports/net/freeswitch/freeswitch-1.10.3.-release/src/
H A Dswitch_jitterbuffer.c67 uint16_t target_seq; member
732 jb->last_target_seq = jb->target_seq; in increment_seq()
733 jb->target_seq = htons((ntohs(jb->target_seq) + 1)); in increment_seq()
739 jb->target_seq = htons((ntohs(jb->last_target_seq) + 1)); in set_read_seq()
752 jb->target_seq = 0; in jb_next_packet_by_seq()
760 if (!jb->target_seq) { in jb_next_packet_by_seq()
762 jb_debug(jb, 2, "FOUND rollover seq: %u\n", ntohs(jb->target_seq)); in jb_next_packet_by_seq()
770 jb_debug(jb, 2, "FOUND desired seq: %u\n", ntohs(jb->target_seq)); in jb_next_packet_by_seq()
956 jb->target_seq = 0; in switch_jb_reset()
1181 if (seq < ntohs(jb->target_seq) - jb->frame_len) { in switch_jb_pop_nack()
[all …]
/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/gpu/drm/radeon/
H A Dradeon_fence.c494 u64 *target_seq, bool intr, in radeon_fence_wait_seq_timeout() argument
500 if (radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq_timeout()
505 if (!target_seq[i]) in radeon_fence_wait_seq_timeout()
508 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
514 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout()
518 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout()
526 if (!target_seq[i]) in radeon_fence_wait_seq_timeout()
530 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/gpu/drm/radeon/
H A Dradeon_fence.c494 u64 *target_seq, bool intr, in radeon_fence_wait_seq_timeout() argument
500 if (radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq_timeout()
505 if (!target_seq[i]) in radeon_fence_wait_seq_timeout()
508 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
514 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout()
518 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout()
526 if (!target_seq[i]) in radeon_fence_wait_seq_timeout()
530 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
/dports/multimedia/libv4l/linux-5.13-rc2/drivers/gpu/drm/radeon/
H A Dradeon_fence.c494 u64 *target_seq, bool intr, in radeon_fence_wait_seq_timeout() argument
500 if (radeon_fence_any_seq_signaled(rdev, target_seq)) in radeon_fence_wait_seq_timeout()
505 if (!target_seq[i]) in radeon_fence_wait_seq_timeout()
508 trace_radeon_fence_wait_begin(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
514 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout()
518 radeon_fence_any_seq_signaled(rdev, target_seq) in radeon_fence_wait_seq_timeout()
526 if (!target_seq[i]) in radeon_fence_wait_seq_timeout()
530 trace_radeon_fence_wait_end(rdev->ddev, i, target_seq[i]); in radeon_fence_wait_seq_timeout()
/dports/biology/exonerate/exonerate-2.4.0/src/model/
H A Dest2genome.test.c29 *target_seq = in Argument_main() local
44 target_seq, 0, Sequence_Strand_UNKNOWN, in Argument_main()
/dports/net-im/py-matrix-synapse/synapse-1.50.2/synapse/storage/databases/main/
H A Devents.py772 for target_id, target_seq in chain_links.get_links_from(
790 "target_sequence_number": target_seq,
796 target_seq,
2261 target_chain, target_seq = target_tuple
2296 current_links[src_seq] = target_seq
2309 for link_src_seq, target_seq in sequence_numbers.items():
2311 yield target_id, target_seq
2333 if target_seq is not None:
2334 yield (src_chain, src_seq, target_chain, target_seq)
2345 target_chain, target_seq = target_tuple
[all …]
/dports/misc/tvm/incubator-tvm-0.6.1/nnvm/tutorials/nlp/
H A Dkeras_s2s_translate.py209 target_seq = np.zeros((1, 1, num_decoder_tokens), dtype='float32')
211 target_seq[0, 0, sampled_token_index] = 1.
214 tvm_dec.set_input('input_2', target_seq)
/dports/misc/py-tvm/incubator-tvm-0.6.1/nnvm/tutorials/nlp/
H A Dkeras_s2s_translate.py209 target_seq = np.zeros((1, 1, num_decoder_tokens), dtype='float32')
211 target_seq[0, 0, sampled_token_index] = 1.
214 tvm_dec.set_input('input_2', target_seq)
/dports/biology/diamond/diamond-2.0.13/src/stats/
H A Dcbs.cpp96 vector<Letter> target_seq = target.copy(); in TargetMatrix() local
100 auto c = composition(Sequence(target_seq.data(), target_seq.size())); in TargetMatrix()
/dports/devel/omniORB/omniORB-4.2.4/src/lib/omniORB/ziop/
H A DomniZIOP.cc548 Compression::Buffer target_seq(z_data_len, z_data_len, z_data); in compressBuffer() local
552 pd_compressors[0]->compress(source_seq, target_seq); in compressBuffer()
569 if (target_seq.NP_data() != z_data) { in compressBuffer()
576 z_data_len = target_seq.length(); in compressBuffer()
671 Compression::Buffer target_seq(g_data_len, g_data_len, g_data); in decompressBuffer() local
685 pd_compressors[compressor_index]->decompress(source_seq, target_seq); in decompressBuffer()
704 if (target_seq.NP_data() != g_data) { in decompressBuffer()
712 if (target_seq.length() != g_data_len) { in decompressBuffer()
715 log << "ZIOP message decompressed to " << target_seq.length() in decompressBuffer()
718 g_data_len = target_seq.length(); in decompressBuffer()
/dports/biology/diamond/diamond-2.0.13/src/align/global_ranking/
H A Dtable.cpp86 …atArray<Extension::SeedHit>::Iterator end, const Sequence* query_seq, const Sequence& target_seq) { in target_score() argument
99 Diagonal_segment d = xdrop_ungapped(query_seq[begin->frame], target_seq, begin->i, begin->j); in target_score()
105 d = xdrop_ungapped(query_seq[i->frame], target_seq, i->i, i->j); in target_score()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/
H A Dseq_loc_mapper.hpp149 CSeq_loc_Mapper(CBioseq_Handle target_seq,
161 CSeq_loc_Mapper(CBioseq_Handle target_seq,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/
H A Dseq_loc_mapper.hpp149 CSeq_loc_Mapper(CBioseq_Handle target_seq,
161 CSeq_loc_Mapper(CBioseq_Handle target_seq,
/dports/biology/diamond/diamond-2.0.13/src/dp/swipe/
H A Dfull_swipe.h57 out.target_seq = target.seq; in traceback()
157 const _sv target_seq(target_seq_vector); in swipe()
173 … open_penalty, hgap, vgap, col_best, it.trace_mask(), row_counter, IdMask(p.query[i], target_seq)); in swipe()
H A Dbanded_swipe.h115 out.target_seq = target.seq; in traceback()
131 out.target_seq = target.seq; in traceback()
247 const _sv target_seq = _sv(target_seqv); in swipe() local
280 … open_penalty, hgap, vgap, col_best, it.trace_mask(), row_counter, IdMask(p.query[i], target_seq)); in swipe()

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