Searched refs:templateSeqs (Results 1 – 5 of 5) sorted by relevance
25 templateFileName = temp; templateSeqs = readSeqs(temp); in Pintail()63 windowSizesTemplate.resize(templateSeqs.size(), window); in doPrep()94 temp = templateSeqs; in doPrep()130 for (int i = 0; i < templateSeqs.size(); i++) { in doPrep()132 decalc->runMask(templateSeqs[i]); in doPrep()138 for (int i = 0; i < templateSeqs.size(); i++) { in doPrep()140 runFilter(templateSeqs[i]); in doPrep()215 for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i]; } in doPrep()216 templateSeqs.clear(); in doPrep()217 templateSeqs = readSeqs(templateFileName); in doPrep()[all …]
84 for (int i = 0; i < templateSeqs.size(); i++) { in ChimeraSlayer()87 Sequence* newSeq = new Sequence(templateSeqs[i]->getName(), templateSeqs[i]->getAligned()); in ChimeraSlayer()136 Sequence* newSeq = new Sequence(templateSeqs[i]->getName(), templateSeqs[i]->getAligned()); in ChimeraSlayer()154 vector<Sequence*> temp = templateSeqs; in doPrep()167 Sequence* newSeq = new Sequence(templateSeqs[i]->getName(), templateSeqs[i]->getAligned()); in doPrep()214 databaseLeft->setNumSeqs(templateSeqs.size()); in doPrep()243 databaseRight->setNumSeqs(templateSeqs.size()); in doPrep()252 for (int i = 0; i < templateSeqs.size(); i++) { databaseLeft->addSequence(*templateSeqs[i]); } in doPrep()254 databaseLeft->setNumSeqs(templateSeqs.size()); in doPrep()275 for (int i = 0; i < templateSeqs.size(); i++) { in getTemplate()[all …]
170 for (int i = 0; i < templateSeqs.size(); i++) { in getSequence()171 if (name == templateSeqs[i]->getName()) { in getSequence()179 temp = new Sequence(templateSeqs[spot]->getName(), templateSeqs[spot]->getAligned()); in getSequence()
143 …virtual ~MothurChimera(){ for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i]; … in ~MothurChimera() local161 vector<Sequence*> templateSeqs;
20 templateFileName = temp; templateSeqs = readSeqs(temp); in Ccode()525 for (int i = 0; i < templateSeqs.size(); i++) { in findClosest()527 Sequence ref = *(templateSeqs[i]); in findClosest()534 temp.seq = new Sequence(templateSeqs[i]->getName(), templateSeqs[i]->getAligned()); in findClosest()