Searched refs:terminalAtomOfReplacementFrag (Results 1 – 1 of 1) sorted by relevance
956 Atom terminalAtomOfReplacementFrag = replacementAtomList.get(replacementAtomList.size()-1); in removeOrMoveObsoleteFunctionalAtoms() local957 …if ((terminalAtomOfReplacementFrag.getIncomingValency() ==1 || replacementAtomList.size()==1)&& te… in removeOrMoveObsoleteFunctionalAtoms()958 replacementFrag.addFunctionalAtom(terminalAtomOfReplacementFrag); in removeOrMoveObsoleteFunctionalAtoms()959 terminalAtomOfReplacementFrag.setCharge(atomToBeReplaced.getCharge()); in removeOrMoveObsoleteFunctionalAtoms()960 …terminalAtomOfReplacementFrag.setProtonsExplicitlyAddedOrRemoved(atomToBeReplaced.getProtonsExplic… in removeOrMoveObsoleteFunctionalAtoms()982 Atom terminalAtomOfReplacementFrag = replacementAtomList.get(replacementAtomList.size()-1); in moveObsoleteOutAtoms() local983 …replacementFrag.addOutAtom(terminalAtomOfReplacementFrag, outAtom.getValency(), outAtom.isSetExpli… in moveObsoleteOutAtoms()