Searched refs:thirdAtom (Results 1 – 5 of 5) sorted by relevance
340 for (auto thirdAtom : secondAtom->neighbors) { in getFourConsecutiveAtomsThatMatchSequence() local341 if (thirdSet.find(thirdAtom) == thirdSet.end()) { in getFourConsecutiveAtomsThatMatchSequence()344 for (auto fourthAtom : thirdAtom->neighbors) { in getFourConsecutiveAtomsThatMatchSequence()351 fourMatchingAtoms.at(2) = thirdAtom; in getFourConsecutiveAtomsThatMatchSequence()
386 for (auto thirdAtom : secondAtom->neighbors) { in getFourConsecutiveAtomsThatMatchSequence() local387 if (thirdSet.find(thirdAtom) == thirdSet.end()) { in getFourConsecutiveAtomsThatMatchSequence()390 for (auto fourthAtom : thirdAtom->neighbors) { in getFourConsecutiveAtomsThatMatchSequence()397 fourMatchingAtoms.at(2) = thirdAtom; in getFourConsecutiveAtomsThatMatchSequence()
614 Index thirdAtom(RSVertex* vertex1, RSVertex* vertex2,
1420 IAtom thirdAtom = (IAtom) third.get(c); in getIfCarbonIsHydrophobic() local1421 … if (thirdAtom.getSymbol().equals("C") || thirdAtom.getSymbol().equals("H")) { in getIfCarbonIsHydrophobic()
804 atom3 = thirdAtom(vertex1,vertex2,start_face,probe,phi); in treatEdge()1098 Index RSComputer::thirdAtom(RSVertex* vertex1, RSVertex* vertex2, in thirdAtom() function in BALL::RSComputer