Searched refs:threePrime (Results 1 – 3 of 3) sorted by relevance
40 final String fivePrime, threePrime; field in IlluminaAdapterPair43 IlluminaAdapterPair(final String fivePrime, final String threePrime) { in IlluminaAdapterPair() argument44 this.threePrime = threePrime; in IlluminaAdapterPair()48 public String get3PrimeAdapter(){ return threePrime; } in get3PrimeAdapter()
25 private int threePrime; field in CutSite38 this.threePrime = Integer.parseInt(threePrimeStr); in CutSite()50 return threePrime; in getThreePrime()
223 bool bestEdgeExists(uint32 readid, bool threePrime) const { in bestEdgeExists() argument224 …return((threePrime) ? (_reads[readid]._best3.readId() != 0) : (_reads[readid]._best5.readId() != 0… in bestEdgeExists()227 …BestEdgeOverlap *getBestEdgeOverlap(uint32 readid, bool threePrime) const { // const on this i… in getBestEdgeOverlap() argument228 …return((threePrime) ? (&_reads[readid]._best3) : (&_reads[readid]._best5)); // still chang… in getBestEdgeOverlap()