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Searched refs:tmp_nm_al (Results 1 – 9 of 9) sorted by relevance

/dports/biology/vt/vt-0.57721/
H A Dvntr_genotyping_record.cpp79 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
336 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample()
337 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample()
356 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
435 tmp_nm_al += (nm-1); in add_allele()
H A Dsnp_genotyping_record.cpp98 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
339 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample()
340 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample()
359 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
438 tmp_nm_al += (nm-1); in add_allele()
H A Dindel_genotyping_record.cpp103 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
352 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample()
353 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample()
372 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
451 tmp_nm_al += (nm-1); in add_allele()
H A Dcomplex_genotyping_record.cpp139 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
388 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample()
389 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample()
408 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample()
487 tmp_nm_al += (nm-1); in add_allele()
H A Dindel_genotyping_record.h82 int32_t tmp_st_al, tmp_nm_al; variable
H A Dvntr_genotyping_record.h88 int32_t tmp_st_al, tmp_nm_al; variable
H A Dsnp_genotyping_record.h105 int32_t tmp_st_al, tmp_nm_al; variable
H A Dcomplex_genotyping_record.h105 int32_t tmp_st_al, tmp_nm_al; variable
H A Dgenotyping_record.h130 int32_t tmp_st_al, tmp_nm_al; variable