Searched refs:tmp_nm_al (Results 1 – 9 of 9) sorted by relevance
/dports/biology/vt/vt-0.57721/ |
H A D | vntr_genotyping_record.cpp | 79 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp() 336 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample() 337 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample() 356 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample() 435 tmp_nm_al += (nm-1); in add_allele()
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H A D | snp_genotyping_record.cpp | 98 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp() 339 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample() 340 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample() 359 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample() 438 tmp_nm_al += (nm-1); in add_allele()
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H A D | indel_genotyping_record.cpp | 103 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp() 352 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample() 353 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample() 372 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample() 451 tmp_nm_al += (nm-1); in add_allele()
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H A D | complex_genotyping_record.cpp | 139 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp() 388 float nm1 = tmp_al_s1 == 0 ? 0 : tmp_nm_al / (float)tmp_al_s1; in flush_sample() 389 …float nm0 = (tmp_dp_ra - tmp_al_s1) == 0 ? 0 : (tmp_nm_s1-tmp_nm_al) / (float)(tmp_dp_ra - tmp_al_… in flush_sample() 408 …float nmr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_nm_al, tmp_nm_s1, tmp_nm_s… in flush_sample() 487 tmp_nm_al += (nm-1); in add_allele()
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H A D | indel_genotyping_record.h | 82 int32_t tmp_st_al, tmp_nm_al; variable
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H A D | vntr_genotyping_record.h | 88 int32_t tmp_st_al, tmp_nm_al; variable
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H A D | snp_genotyping_record.h | 105 int32_t tmp_st_al, tmp_nm_al; variable
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H A D | complex_genotyping_record.h | 105 int32_t tmp_st_al, tmp_nm_al; variable
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H A D | genotyping_record.h | 130 int32_t tmp_st_al, tmp_nm_al; variable
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