/dports/biology/ncbi-toolkit/ncbi/network/taxon1/taxon2/ |
H A D | txcdproc.c | 333 return tnp; in s_findname() 373 for(tnp= tnp_list; tnp != NULL; tnp= tnp->next) n++; in tax_findByName() 392 tnp_list= tnp; in tax_findByName() 423 return tnp; in s_getorgnames() 458 for(tnp= tnp_list; tnp != NULL; tnp= tnp->next) n++; in tax_getOrgNames() 477 tnp_list= tnp; in tax_getOrgNames() 706 return tnp; in s_getlineage() 749 for(tnp= tnp_list; tnp != NULL; tnp= tnp->next) n++; in txc_getLineage() 775 tnp_list= tnp; in txc_getLineage() 807 return tnp; in s_getchildren() [all …]
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H A D | parttree.c | 95 printf("SPY is added %d %s\n", tnp->tax_id, tnp->node_label); in ptree_spy() 111 if(spy_bag->bag_size > tnp->tax_id) spy_bag->id_x_ref[tnp->tax_id]= id2; in ptree_spy() 124 TXC_TreeNodePtr tnp; in ptree_getNode() local 134 return tnp->node_label; in ptree_getNode() 137 return tnp; in ptree_getNode() 139 return &tnp->tax_id; in ptree_getNode() 168 tnp->tax_id= 1; in tax_ptree_new() 169 tnp->flags= 0; in tax_ptree_new() 176 MemFree(tnp); in tax_ptree_new() 186 TXC_TreeNodePtr tnp; in known_id() local [all …]
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H A D | tc2proc.c | 115 TXC_TreeNodePtr tnp; in getLiveId() local 121 return (tnp != NULL)? tnp->tax_id : 0; in getLiveId() 234 if(tnp != NULL) ret_id= tnp->tax_id; in tax1_getParent() 305 if(tnp != NULL) ids[n++]= tnp->tax_id; in tax1_getChildren() 343 if(tnp != NULL) aid= tnp->tax_id; in tax1_join() 869 TXC_TreeNodePtr tnp; in bldOrgMod() local 959 genus= tnp; in binomialName() 1179 node->name= tnp->node_label + (StringLen(tnp->node_label) + 1); in bldOrgName() 1932 return (tnp != NULL)? tnp->tax_id : 0; in tax1e_getTaxId() 1942 return (tnp != NULL)? StringSave(tnp->node_label) : NULL; in tax1e_getTaxName() [all …]
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/dports/science/berkeleygw/BGW-2.0.0/Common/ |
H A D | sort.F90 | 109 subroutine make_identity_symmetry_first(nsyms, mtrx, tnp) argument 112 real(DP), intent(inout) :: tnp(3, 48) local 131 tnp_temp(1:3) = tnp(1:3, 1) 132 tnp(1:3, 1) = tnp(1:3, isym) 133 tnp(1:3, isym) = tnp_temp(1:3) 154 subroutine sort_symmetries(nsyms, mtrx, tnp) argument 157 real(DP), intent(inout) :: tnp(3, 48) local 189 tnp_temp(1:3, isym) = tnp(1:3, order(isym)) 193 tnp(1:3, 1:nsyms) = tnp_temp(1:3, 1:nsyms)
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H A D | check_inversion.f90 | 34 real(DP), optional, intent(in) :: tnp(3, 48) !< fractional translations. local 72 if(present(tnp)) then 73 if(sum(abs(tnp(1:3, isym))) < TOL_Small) origin_inv = .true. 86 if(invflag > 0 .and. .not. present(tnp) .and. peinf%inode==0) then 126 call check_inversion(iflavor, syms%ntran, syms%mtrx, nspin, warn, real_need_inv, tnp = syms%tnp)
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H A D | symmetries.f90 | 70 …subroutine get_symmetries(nat, atyp, apos, avec, nfft, cell_symmetry, ntran, mtrx, tnp, spacegroup… argument 79 real(DP), intent(out) :: tnp(:,:) !< frational translations (3, 48) local 188 tnp(1:3, ntran) = 2 * PI_D * tnp_temp(1:3, isym) 195 call make_identity_symmetry_first(ntran, mtrx, tnp)
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H A D | wfn_rho_vxc_io_inc.f90 | 54 alat, avec, adot, recvol, blat, bvec, bdot, mtrx, tnp, atyp, apos, ngk, & argument 70 real(DP), intent(INTENT) :: tnp(3, 48) !< fractional translation local 258 tnp(:,:) = 0d0 261 READ_WRITE()(iunit FORMAT) ((tnp(jj, itran), jj = 1, 3), itran = 1, ntran) 263 call make_identity_symmetry_first(ntran, mtrx, tnp) 319 call MPI_BCAST(tnp, 3*48, MPI_REAL_DP, 0, MPI_COMM_WORLD, mpierr) 420 call check_inversion(iflavor, ntran, mtrx, ns, warn_, .false., tnp = tnp) 447 …ys%alat, crys%avec, crys%adot, crys%recvol, crys%blat, crys%bvec, crys%bdot, syms%mtrx, syms%tnp, & 661 …recvol, blat, bvec, bdot, mtrx, tnp, atyp, apos, ngk, kw, kpt, ifmin, ifmax, energies, occupations… argument 674 real(DP), intent(INTENT) :: tnp(3, 48) !< fractional translation local [all …]
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/dports/multimedia/lives/lives-3.2.0/lives-plugins/weed-plugins/ |
H A D | fourKlives.c | 215 if (!strcmp(tnp, "kantti") || !strcmp(tnp, "square")) in syna_get() 217 else if (!strcmp(tnp, "sini") || !strcmp(tnp, "sin")) in syna_get() 219 else if (!strcmp(tnp, "saha") || !strcmp(tnp, "saw")) in syna_get() 221 else if (!strcmp(tnp, "kohina") || !strcmp(tnp, "noise")) in syna_get() 241 sweep = atoi(tnp); in syna_get() 252 if (!strcmp(tnp, "kantti") || !strcmp(tnp, "square")) in syna_get() 254 else if (!strcmp(tnp, "sini") || !strcmp(tnp, "sin")) in syna_get() 256 else if (!strcmp(tnp, "saha") || !strcmp(tnp, "saw")) in syna_get() 258 else if (!strcmp(tnp, "kohina") || !strcmp(tnp, "noise")) in syna_get() 270 if (tnp != NULL) { in syna_get() [all …]
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/dports/math/cvc4/CVC4-1.7/src/theory/datatypes/ |
H A D | sygus_simple_sym.cpp | 158 Assert(d_tds->hasKind(tnp, pk)); in considerArgKind() 163 int pc = d_tds->getKindConsNum(tnp, pk); in considerArgKind() 179 if (tn != tnp) in considerArgKind() 402 if (rt.satisfiedBy(d_tds, tnp)) in considerArgKind() 427 if (!considerConst(pdt, tnp, c, pk, arg)) in considerConst() 432 int pc = d_tds->getKindConsNum(tnp, pk); in considerConst() 477 Assert(d_tds->hasKind(tnp, pk)); in considerConst() 478 int pc = d_tds->getKindConsNum(tnp, pk); in considerConst() 488 if (otn == tnp) in considerConst() 502 if (d_tds->hasConst(tnp, sc)) in considerConst() [all …]
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H A D | sygus_simple_sym.h | 59 bool considerArgKind(TypeNode tn, TypeNode tnp, Kind k, Kind pk, int arg); 74 bool considerConst(TypeNode tn, TypeNode tnp, Node c, Kind pk, int arg); 86 int solveForArgument(TypeNode tnp, unsigned cindex, unsigned arg); 100 const Datatype& pdt, TypeNode tnp, Node c, Kind pk, int arg);
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/dports/biology/pbbam/pbbam-0.18.0/tests/src/cram/ |
H A D | pbbamify.t.in | 23 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 24 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 25 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 26 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 27 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 32 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 33 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 65 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\tRG:Z:67e06f58\tnp:i:6\trq:f:0.993687\… 86 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… 116 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4… [all …]
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H A D | bam2sam.t.in | 14 …AGTGAGTCGTATTAATTTCGCGGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:4072\tqs:… 23 …AGTGAGTCGTATTAATTTCGCGGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:4072\tqs:… 36 …AGTGAGTCGTATTAATTTCGCGGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:4072\tqs:… 37 …TGAGCAATACTCTAAATACATGACTCT\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:6183\tqs:… 38 …CAGTGAGTCGTATTAATTTCGCGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:8214\tqs:… 39 …TGAGCAATAACTCTATACATGACTCAT\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:10277\tqs… 40 …TGGAGTCGTATTAATTTCGCGGGTATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:12283\tqs…
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/dports/java/berkeley-db/je-6.2.31/test/com/sleepycat/je/dbi/ |
H A D | SortedLSNTreeWalkerTest.java | 341 tnp, null /*savedExceptions*/, null); in walkTree() 353 assertEquals(stats.getInternalNodeCount(), tnp.inCount + 1); in walkTree() 357 tnp.dbinCount); in walkTree() 358 assertEquals(stats.getLeafNodeCount(), tnp.entryCount); in walkTree() 361 System.out.println("INs: " + tnp.inCount); in walkTree() 362 System.out.println("BINs: " + tnp.binCount); in walkTree() 363 System.out.println("DINs: " + tnp.dinCount); in walkTree() 364 System.out.println("DBINs: " + tnp.dbinCount); in walkTree() 365 System.out.println("entries: " + tnp.entryCount); in walkTree() 366 System.out.println("dupLN: " + tnp.dupLNCount); in walkTree() [all …]
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/dports/math/librsb/librsb-1.2.0.10/ |
H A D | rsb_tune.c | 414 if(tnp) in rsb__do_bench_spxm() 457 if(tnp) in rsb__do_bench_spxm() 480 RSB_STAT_DUMP(it,tnp?*tnp:otn,ct,dt,tt,bt,wt,ss,times); in rsb__do_bench_spxm() 481 RSB_STAT_TAKE(it,tnp?*tnp:otn,ct,dt,tt,bt,wt,ss,times,tstp); in rsb__do_bench_spxm() 651 *tnp = cut; in rsb__do_bench_spxm_t() 800 if(aiap->tnp && *aiap->tnp!=0) in rsb__do_tune_spxm_round() 931 if( aiap->tnp && *aiap->tnp > mt ) in rsb__do_tune_spxm_round() 938 if(aiap->tnp) in rsb__do_tune_spxm_round() 940 *aiap->tnp = btn; in rsb__do_tune_spxm_round() 949 if(aiap->tnp && *aiap->tnp!=0) in rsb__do_tune_spxm_round() [all …]
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/dports/graphics/py-scikit-image/scikit-image-0.19.0/skimage/transform/ |
H A D | hough_transform.py | 361 tnp = len(accum_sorted) if total_num_peaks == np.inf else total_num_peaks 367 return (accum_sorted[:tnp], 368 cx_sorted[:tnp], 369 cy_sorted[:tnp], 370 r_sorted[:tnp]) 375 cx_sorted, cy_sorted, min_xdistance, min_ydistance, tnp
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/dports/dns/adns/adns-1.6.0/client/ |
H A D | adh-main.c | 113 const struct typename *tnp; in of_type() local 123 for (tnp=typenames; in of_type() 124 tnp->type && strcmp(arg,tnp->desc); in of_type() 125 tnp++); in of_type() 126 if (!tnp->type) usageerr("unknown RR type %s",arg); in of_type() 127 ov_type= tnp->type; in of_type()
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/dports/editors/xvile/vile-9.8v/ |
H A D | path.c | 720 if (tnp != temp_name && !is_slashc(tnp[-1])) in resolve_directory() 735 if (tnp == NULL) { in resolve_directory() 739 *tnp++ = '.'; in resolve_directory() 740 *tnp = EOS; in resolve_directory() 744 if (tnp == temp_name && is_slashc(*tnp)) /* initial slash */ in resolve_directory() 745 tnp++; in resolve_directory() 746 *tnp = EOS; in resolve_directory() 798 *tnp++ = SLASHC; in resolve_directory() 799 *tnp++ = '.'; in resolve_directory() 800 *tnp++ = '.'; in resolve_directory() [all …]
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/dports/editors/vile/vile-9.8v/ |
H A D | path.c | 720 if (tnp != temp_name && !is_slashc(tnp[-1])) in resolve_directory() 735 if (tnp == NULL) { in resolve_directory() 739 *tnp++ = '.'; in resolve_directory() 740 *tnp = EOS; in resolve_directory() 744 if (tnp == temp_name && is_slashc(*tnp)) /* initial slash */ in resolve_directory() 745 tnp++; in resolve_directory() 746 *tnp = EOS; in resolve_directory() 798 *tnp++ = SLASHC; in resolve_directory() 799 *tnp++ = '.'; in resolve_directory() 800 *tnp++ = '.'; in resolve_directory() [all …]
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/dports/lang/sdcc/sdcc-4.0.0/sdas/linksrc/ |
H A D | lknoice.c | 150 struct noicefn *np, *tnp; in NoICEmagic() local 181 tnp = noicefnp; in NoICEmagic() 182 while (tnp->n_np) in NoICEmagic() 183 tnp = tnp->n_np; in NoICEmagic() 184 tnp->n_np = np; in NoICEmagic()
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/nwpw/pspw/lib/ion/ |
H A D | ion_ion.F | 382 integer i,j,tnp,tid,dutask local 394 call Parallel_np(tnp) 418 dutask = mod((dutask+1),tnp) 451 integer i,j,tnp,tid,dutask local 463 call Parallel_np(tnp) 486 dutask = mod((dutask+1),tnp) 519 integer i,j,tnp,tid,dutask local 531 call Parallel_np(tnp) 554 dutask = mod((dutask+1),tnp)
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/dports/science/berkeleygw/BGW-2.0.0/Epsilon/ |
H A D | printchi.f90 | 17 real(DP) :: tnp(200, 3) variable 130 tnp=0.0d0 136 (tnp(n,k), & 140 (tnp(n,k), &
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/dports/science/nwchem-data/nwchem-7.0.2-release/src/nwpw/pspw/lib/ion/ |
H A D | ion_ion.F | 378 integer i,j,tnp,tid,dutask 390 call Parallel_np(tnp) 414 dutask = mod((dutask+1),tnp) 447 integer i,j,tnp,tid,dutask 459 call Parallel_np(tnp) 482 dutask = mod((dutask+1),tnp) 515 integer i,j,tnp,tid,dutask 527 call Parallel_np(tnp) 550 dutask = mod((dutask+1),tnp)
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/dports/science/code_saturne/code_saturne-7.1.0/src/cfbl/ |
H A D | cs_hgn_thermo.c | 133 cs_real_t tnp = tini*1.0001; in _secant_tsat() local 134 cs_real_t fnp = _tsat_function(tnp, pr); in _secant_tsat() 135 dfn = (fnp - fn)/(tnp - tn); in _secant_tsat() 141 tnp = tnp - fnp / dfn; in _secant_tsat() 142 fnp = _tsat_function(tnp, pr); in _secant_tsat() 143 dfn = (fnp - fn) / (tnp - tn); in _secant_tsat() 144 tn = tnp; in _secant_tsat()
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/nwpw/nwpwlib/ewald/ |
H A D | ewald.F | 248 call Parallel_np(tnp) 1047 if (tnp.gt.1) then 1367 dutask=mod(dutask+1,tnp) 1371 if (tnp.gt.1) then 1478 dutask=mod(dutask+1,tnp) 1633 if (tnp.gt.1) then 1936 if (tnp.gt.1) then 2045 dutask=mod(dutask+1,tnp) 2194 if (tnp.gt.1) then 2500 if (tnp.gt.1) then [all …]
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/dports/science/nwchem-data/nwchem-7.0.2-release/src/nwpw/nwpwlib/ewald/ |
H A D | ewald.F | 248 call Parallel_np(tnp) 1052 if (tnp.gt.1) then 1372 dutask=mod(dutask+1,tnp) 1376 if (tnp.gt.1) then 1483 dutask=mod(dutask+1,tnp) 1638 if (tnp.gt.1) then 1941 if (tnp.gt.1) then 2050 dutask=mod(dutask+1,tnp) 2199 if (tnp.gt.1) then 2505 if (tnp.gt.1) then [all …]
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