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/dports/biology/ncbi-toolkit/ncbi/network/taxon1/taxon2/
H A Dtxcdproc.c333 return tnp; in s_findname()
373 for(tnp= tnp_list; tnp != NULL; tnp= tnp->next) n++; in tax_findByName()
392 tnp_list= tnp; in tax_findByName()
423 return tnp; in s_getorgnames()
458 for(tnp= tnp_list; tnp != NULL; tnp= tnp->next) n++; in tax_getOrgNames()
477 tnp_list= tnp; in tax_getOrgNames()
706 return tnp; in s_getlineage()
749 for(tnp= tnp_list; tnp != NULL; tnp= tnp->next) n++; in txc_getLineage()
775 tnp_list= tnp; in txc_getLineage()
807 return tnp; in s_getchildren()
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H A Dparttree.c95 printf("SPY is added %d %s\n", tnp->tax_id, tnp->node_label); in ptree_spy()
111 if(spy_bag->bag_size > tnp->tax_id) spy_bag->id_x_ref[tnp->tax_id]= id2; in ptree_spy()
124 TXC_TreeNodePtr tnp; in ptree_getNode() local
134 return tnp->node_label; in ptree_getNode()
137 return tnp; in ptree_getNode()
139 return &tnp->tax_id; in ptree_getNode()
168 tnp->tax_id= 1; in tax_ptree_new()
169 tnp->flags= 0; in tax_ptree_new()
176 MemFree(tnp); in tax_ptree_new()
186 TXC_TreeNodePtr tnp; in known_id() local
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H A Dtc2proc.c115 TXC_TreeNodePtr tnp; in getLiveId() local
121 return (tnp != NULL)? tnp->tax_id : 0; in getLiveId()
234 if(tnp != NULL) ret_id= tnp->tax_id; in tax1_getParent()
305 if(tnp != NULL) ids[n++]= tnp->tax_id; in tax1_getChildren()
343 if(tnp != NULL) aid= tnp->tax_id; in tax1_join()
869 TXC_TreeNodePtr tnp; in bldOrgMod() local
959 genus= tnp; in binomialName()
1179 node->name= tnp->node_label + (StringLen(tnp->node_label) + 1); in bldOrgName()
1932 return (tnp != NULL)? tnp->tax_id : 0; in tax1e_getTaxId()
1942 return (tnp != NULL)? StringSave(tnp->node_label) : NULL; in tax1e_getTaxName()
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/dports/science/berkeleygw/BGW-2.0.0/Common/
H A Dsort.F90109 subroutine make_identity_symmetry_first(nsyms, mtrx, tnp) argument
112 real(DP), intent(inout) :: tnp(3, 48) local
131 tnp_temp(1:3) = tnp(1:3, 1)
132 tnp(1:3, 1) = tnp(1:3, isym)
133 tnp(1:3, isym) = tnp_temp(1:3)
154 subroutine sort_symmetries(nsyms, mtrx, tnp) argument
157 real(DP), intent(inout) :: tnp(3, 48) local
189 tnp_temp(1:3, isym) = tnp(1:3, order(isym))
193 tnp(1:3, 1:nsyms) = tnp_temp(1:3, 1:nsyms)
H A Dcheck_inversion.f9034 real(DP), optional, intent(in) :: tnp(3, 48) !< fractional translations. local
72 if(present(tnp)) then
73 if(sum(abs(tnp(1:3, isym))) < TOL_Small) origin_inv = .true.
86 if(invflag > 0 .and. .not. present(tnp) .and. peinf%inode==0) then
126 call check_inversion(iflavor, syms%ntran, syms%mtrx, nspin, warn, real_need_inv, tnp = syms%tnp)
H A Dsymmetries.f9070 …subroutine get_symmetries(nat, atyp, apos, avec, nfft, cell_symmetry, ntran, mtrx, tnp, spacegroup… argument
79 real(DP), intent(out) :: tnp(:,:) !< frational translations (3, 48) local
188 tnp(1:3, ntran) = 2 * PI_D * tnp_temp(1:3, isym)
195 call make_identity_symmetry_first(ntran, mtrx, tnp)
H A Dwfn_rho_vxc_io_inc.f9054 alat, avec, adot, recvol, blat, bvec, bdot, mtrx, tnp, atyp, apos, ngk, & argument
70 real(DP), intent(INTENT) :: tnp(3, 48) !< fractional translation local
258 tnp(:,:) = 0d0
261 READ_WRITE()(iunit FORMAT) ((tnp(jj, itran), jj = 1, 3), itran = 1, ntran)
263 call make_identity_symmetry_first(ntran, mtrx, tnp)
319 call MPI_BCAST(tnp, 3*48, MPI_REAL_DP, 0, MPI_COMM_WORLD, mpierr)
420 call check_inversion(iflavor, ntran, mtrx, ns, warn_, .false., tnp = tnp)
447 …ys%alat, crys%avec, crys%adot, crys%recvol, crys%blat, crys%bvec, crys%bdot, syms%mtrx, syms%tnp, &
661 …recvol, blat, bvec, bdot, mtrx, tnp, atyp, apos, ngk, kw, kpt, ifmin, ifmax, energies, occupations… argument
674 real(DP), intent(INTENT) :: tnp(3, 48) !< fractional translation local
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/dports/multimedia/lives/lives-3.2.0/lives-plugins/weed-plugins/
H A DfourKlives.c215 if (!strcmp(tnp, "kantti") || !strcmp(tnp, "square")) in syna_get()
217 else if (!strcmp(tnp, "sini") || !strcmp(tnp, "sin")) in syna_get()
219 else if (!strcmp(tnp, "saha") || !strcmp(tnp, "saw")) in syna_get()
221 else if (!strcmp(tnp, "kohina") || !strcmp(tnp, "noise")) in syna_get()
241 sweep = atoi(tnp); in syna_get()
252 if (!strcmp(tnp, "kantti") || !strcmp(tnp, "square")) in syna_get()
254 else if (!strcmp(tnp, "sini") || !strcmp(tnp, "sin")) in syna_get()
256 else if (!strcmp(tnp, "saha") || !strcmp(tnp, "saw")) in syna_get()
258 else if (!strcmp(tnp, "kohina") || !strcmp(tnp, "noise")) in syna_get()
270 if (tnp != NULL) { in syna_get()
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/dports/math/cvc4/CVC4-1.7/src/theory/datatypes/
H A Dsygus_simple_sym.cpp158 Assert(d_tds->hasKind(tnp, pk)); in considerArgKind()
163 int pc = d_tds->getKindConsNum(tnp, pk); in considerArgKind()
179 if (tn != tnp) in considerArgKind()
402 if (rt.satisfiedBy(d_tds, tnp)) in considerArgKind()
427 if (!considerConst(pdt, tnp, c, pk, arg)) in considerConst()
432 int pc = d_tds->getKindConsNum(tnp, pk); in considerConst()
477 Assert(d_tds->hasKind(tnp, pk)); in considerConst()
478 int pc = d_tds->getKindConsNum(tnp, pk); in considerConst()
488 if (otn == tnp) in considerConst()
502 if (d_tds->hasConst(tnp, sc)) in considerConst()
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H A Dsygus_simple_sym.h59 bool considerArgKind(TypeNode tn, TypeNode tnp, Kind k, Kind pk, int arg);
74 bool considerConst(TypeNode tn, TypeNode tnp, Node c, Kind pk, int arg);
86 int solveForArgument(TypeNode tnp, unsigned cindex, unsigned arg);
100 const Datatype& pdt, TypeNode tnp, Node c, Kind pk, int arg);
/dports/biology/pbbam/pbbam-0.18.0/tests/src/cram/
H A Dpbbamify.t.in23 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
24 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
25 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
26 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
27 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
32 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
33 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
65 …CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC\tRG:Z:67e06f58\tnp:i:6\trq:f:0.993687\…
86 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
116 …6,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100\tnp:i:1\tpw:B:C,1,2,3,4…
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H A Dbam2sam.t.in14 …AGTGAGTCGTATTAATTTCGCGGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:4072\tqs:…
23 …AGTGAGTCGTATTAATTTCGCGGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:4072\tqs:…
36 …AGTGAGTCGTATTAATTTCGCGGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:4072\tqs:…
37 …TGAGCAATACTCTAAATACATGACTCT\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:6183\tqs:…
38 …CAGTGAGTCGTATTAATTTCGCGGATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:8214\tqs:…
39 …TGAGCAATAACTCTATACATGACTCAT\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:10277\tqs…
40 …TGGAGTCGTATTAATTTCGCGGGTATC\t*\tRG:Z:a955def6\tbc:B:S,1,1\tbq:i:1\tcx:i:31\tnp:i:1\tqe:i:12283\tqs…
/dports/java/berkeley-db/je-6.2.31/test/com/sleepycat/je/dbi/
H A DSortedLSNTreeWalkerTest.java341 tnp, null /*savedExceptions*/, null); in walkTree()
353 assertEquals(stats.getInternalNodeCount(), tnp.inCount + 1); in walkTree()
357 tnp.dbinCount); in walkTree()
358 assertEquals(stats.getLeafNodeCount(), tnp.entryCount); in walkTree()
361 System.out.println("INs: " + tnp.inCount); in walkTree()
362 System.out.println("BINs: " + tnp.binCount); in walkTree()
363 System.out.println("DINs: " + tnp.dinCount); in walkTree()
364 System.out.println("DBINs: " + tnp.dbinCount); in walkTree()
365 System.out.println("entries: " + tnp.entryCount); in walkTree()
366 System.out.println("dupLN: " + tnp.dupLNCount); in walkTree()
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/dports/math/librsb/librsb-1.2.0.10/
H A Drsb_tune.c414 if(tnp) in rsb__do_bench_spxm()
457 if(tnp) in rsb__do_bench_spxm()
480 RSB_STAT_DUMP(it,tnp?*tnp:otn,ct,dt,tt,bt,wt,ss,times); in rsb__do_bench_spxm()
481 RSB_STAT_TAKE(it,tnp?*tnp:otn,ct,dt,tt,bt,wt,ss,times,tstp); in rsb__do_bench_spxm()
651 *tnp = cut; in rsb__do_bench_spxm_t()
800 if(aiap->tnp && *aiap->tnp!=0) in rsb__do_tune_spxm_round()
931 if( aiap->tnp && *aiap->tnp > mt ) in rsb__do_tune_spxm_round()
938 if(aiap->tnp) in rsb__do_tune_spxm_round()
940 *aiap->tnp = btn; in rsb__do_tune_spxm_round()
949 if(aiap->tnp && *aiap->tnp!=0) in rsb__do_tune_spxm_round()
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/dports/graphics/py-scikit-image/scikit-image-0.19.0/skimage/transform/
H A Dhough_transform.py361 tnp = len(accum_sorted) if total_num_peaks == np.inf else total_num_peaks
367 return (accum_sorted[:tnp],
368 cx_sorted[:tnp],
369 cy_sorted[:tnp],
370 r_sorted[:tnp])
375 cx_sorted, cy_sorted, min_xdistance, min_ydistance, tnp
/dports/dns/adns/adns-1.6.0/client/
H A Dadh-main.c113 const struct typename *tnp; in of_type() local
123 for (tnp=typenames; in of_type()
124 tnp->type && strcmp(arg,tnp->desc); in of_type()
125 tnp++); in of_type()
126 if (!tnp->type) usageerr("unknown RR type %s",arg); in of_type()
127 ov_type= tnp->type; in of_type()
/dports/editors/xvile/vile-9.8v/
H A Dpath.c720 if (tnp != temp_name && !is_slashc(tnp[-1])) in resolve_directory()
735 if (tnp == NULL) { in resolve_directory()
739 *tnp++ = '.'; in resolve_directory()
740 *tnp = EOS; in resolve_directory()
744 if (tnp == temp_name && is_slashc(*tnp)) /* initial slash */ in resolve_directory()
745 tnp++; in resolve_directory()
746 *tnp = EOS; in resolve_directory()
798 *tnp++ = SLASHC; in resolve_directory()
799 *tnp++ = '.'; in resolve_directory()
800 *tnp++ = '.'; in resolve_directory()
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/dports/editors/vile/vile-9.8v/
H A Dpath.c720 if (tnp != temp_name && !is_slashc(tnp[-1])) in resolve_directory()
735 if (tnp == NULL) { in resolve_directory()
739 *tnp++ = '.'; in resolve_directory()
740 *tnp = EOS; in resolve_directory()
744 if (tnp == temp_name && is_slashc(*tnp)) /* initial slash */ in resolve_directory()
745 tnp++; in resolve_directory()
746 *tnp = EOS; in resolve_directory()
798 *tnp++ = SLASHC; in resolve_directory()
799 *tnp++ = '.'; in resolve_directory()
800 *tnp++ = '.'; in resolve_directory()
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/dports/lang/sdcc/sdcc-4.0.0/sdas/linksrc/
H A Dlknoice.c150 struct noicefn *np, *tnp; in NoICEmagic() local
181 tnp = noicefnp; in NoICEmagic()
182 while (tnp->n_np) in NoICEmagic()
183 tnp = tnp->n_np; in NoICEmagic()
184 tnp->n_np = np; in NoICEmagic()
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/nwpw/pspw/lib/ion/
H A Dion_ion.F382 integer i,j,tnp,tid,dutask local
394 call Parallel_np(tnp)
418 dutask = mod((dutask+1),tnp)
451 integer i,j,tnp,tid,dutask local
463 call Parallel_np(tnp)
486 dutask = mod((dutask+1),tnp)
519 integer i,j,tnp,tid,dutask local
531 call Parallel_np(tnp)
554 dutask = mod((dutask+1),tnp)
/dports/science/berkeleygw/BGW-2.0.0/Epsilon/
H A Dprintchi.f9017 real(DP) :: tnp(200, 3) variable
130 tnp=0.0d0
136 (tnp(n,k), &
140 (tnp(n,k), &
/dports/science/nwchem-data/nwchem-7.0.2-release/src/nwpw/pspw/lib/ion/
H A Dion_ion.F378 integer i,j,tnp,tid,dutask
390 call Parallel_np(tnp)
414 dutask = mod((dutask+1),tnp)
447 integer i,j,tnp,tid,dutask
459 call Parallel_np(tnp)
482 dutask = mod((dutask+1),tnp)
515 integer i,j,tnp,tid,dutask
527 call Parallel_np(tnp)
550 dutask = mod((dutask+1),tnp)
/dports/science/code_saturne/code_saturne-7.1.0/src/cfbl/
H A Dcs_hgn_thermo.c133 cs_real_t tnp = tini*1.0001; in _secant_tsat() local
134 cs_real_t fnp = _tsat_function(tnp, pr); in _secant_tsat()
135 dfn = (fnp - fn)/(tnp - tn); in _secant_tsat()
141 tnp = tnp - fnp / dfn; in _secant_tsat()
142 fnp = _tsat_function(tnp, pr); in _secant_tsat()
143 dfn = (fnp - fn) / (tnp - tn); in _secant_tsat()
144 tn = tnp; in _secant_tsat()
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/nwpw/nwpwlib/ewald/
H A Dewald.F248 call Parallel_np(tnp)
1047 if (tnp.gt.1) then
1367 dutask=mod(dutask+1,tnp)
1371 if (tnp.gt.1) then
1478 dutask=mod(dutask+1,tnp)
1633 if (tnp.gt.1) then
1936 if (tnp.gt.1) then
2045 dutask=mod(dutask+1,tnp)
2194 if (tnp.gt.1) then
2500 if (tnp.gt.1) then
[all …]
/dports/science/nwchem-data/nwchem-7.0.2-release/src/nwpw/nwpwlib/ewald/
H A Dewald.F248 call Parallel_np(tnp)
1052 if (tnp.gt.1) then
1372 dutask=mod(dutask+1,tnp)
1376 if (tnp.gt.1) then
1483 dutask=mod(dutask+1,tnp)
1638 if (tnp.gt.1) then
1941 if (tnp.gt.1) then
2050 dutask=mod(dutask+1,tnp)
2199 if (tnp.gt.1) then
2505 if (tnp.gt.1) then
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