| /dports/biology/plink/plink-ng-79b2df8c/1.9/ |
| H A D | plink_misc.c | 1807 if ((token_ct == 6) || (token_ct == 7)) { in get_freq_file_type()
1829 if (token_ct == 6) { in get_freq_file_type()
5117 token_ct -= 2; in meta_analysis_open_and_read_header()
5125 token_ct--; in meta_analysis_open_and_read_header()
5131 *token_ct_ptr = token_ct; in meta_analysis_open_and_read_header()
5301 uint32_t token_ct; in meta_analysis() local
5731 if (token_ct & 1) { in meta_analysis()
5785 if (token_ct & 1) { in meta_analysis()
6067 token_ct = parse_max; in meta_analysis()
6146 if (token_ct & 1) { in meta_analysis()
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| H A D | plink_set.c | 2454 uint32_t token_ct = need_var_id + 2 * need_pos + do_pfilter; in annotate() local
2912 if (seq_idx != token_ct) { in annotate()
2913 …sprintf(g_logbuf, "Error: Missing column header%s in %s.\n", (seq_idx + 1 == token_ct)? "" : "s", … in annotate()
2973 for (seq_idx = 1; seq_idx < token_ct; seq_idx++) { in annotate()
3257 uint32_t token_ct = 2 + (extractname != nullptr) + do_pfilter; in gene_report() local
3485 if (seq_idx != token_ct) { in gene_report()
3486 …sprintf(g_logbuf, "Error: Missing column header%s in %s.\n", (seq_idx + 1 == token_ct)? "" : "s", … in gene_report()
3529 for (seq_idx = 1; seq_idx < token_ct; seq_idx++) { in gene_report()
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| H A D | plink_common.c | 628 uintptr_t token_ct = *token_ct_ptr; in scan_token_ct_len() local
645 token_ct++; in scan_token_ct_len()
683 token_ct++; in scan_token_ct_len()
691 *token_ct_ptr = token_ct; in scan_token_ct_len()
695 int32_t read_tokens(uintptr_t half_bufsize, uintptr_t token_ct, uintptr_t max_token_len, FILE* infi… in read_tokens() argument
713 if (token_idx + 1 == token_ct) { in read_tokens()
750 if (++token_idx == token_ct) { in read_tokens()
885 uint32_t token_ct = 0; in count_tokens() local
890 token_ct++; in count_tokens()
896 return token_ct; in count_tokens()
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| H A D | plink_common.h | 1404 int32_t read_tokens(uintptr_t half_bufsize, uintptr_t token_ct, uintptr_t max_token_len, FILE* infi…
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| /dports/biology/plink/plink-ng-79b2df8c/2.0/ |
| H A D | plink2_cmdline.cc | 1680 …restrict range_list_flag, const char* __restrict file_descrip, uint32_t token_ct, uint32_t fixed_l… in StringRangeListToBitarr() argument
1684 assert(token_ct); in StringRangeListToBitarr()
1685 assert(!PopcountWords(bitarr, BitCtToWordCt(token_ct))); in StringRangeListToBitarr()
1722 if (++item_idx == token_ct) { in StringRangeListToBitarr()
1759 …restrict range_list_flag, const char* __restrict file_descrip, uint32_t token_ct, uint32_t fixed_l… in StringRangeListToBitarrAlloc() argument
1762 uintptr_t token_ctl = BitCtToWordCt(token_ct); in StringRangeListToBitarrAlloc()
1778 …ine, range_list_ptr, sorted_ids, id_map, range_list_flag, file_descrip, token_ct, fixed_len, comma… in StringRangeListToBitarrAlloc()
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| H A D | plink2_common.cc | 1144 const uint32_t token_ct = CountTokens(line_iter); in LoadXidHeaderPair() local
1145 if (token_ct == 2) { in LoadXidHeaderPair()
1147 } else if (token_ct == 4) { in LoadXidHeaderPair()
1149 } else if (likely(token_ct == 6)) { in LoadXidHeaderPair()
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| H A D | plink2_misc.cc | 1629 const uint32_t token_ct = CountTokens(line_iter); in PrescanSampleIds() local
1630 if (token_ct == 4) { in PrescanSampleIds()
1633 } else if (unlikely(token_ct != 2)) { in PrescanSampleIds()
1781 const uint32_t token_ct = CountTokens(line_iter); in PrescanParentalIds() local
1782 if (unlikely(token_ct < 3)) { in PrescanParentalIds()
1786 pat_col_idx = (token_ct == 3)? 1 : 2; in PrescanParentalIds()
1894 const uint32_t token_ct = CountTokens(line_iter); in UpdateSampleIds() local
1895 if (token_ct == 4) { in UpdateSampleIds()
1898 } else if (unlikely(token_ct != 2)) { in UpdateSampleIds()
2081 const uint32_t token_ct = CountTokens(line_iter); in UpdateSampleParents() local
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| H A D | plink2_cmdline.h | 1385 …restrict range_list_flag, const char* __restrict file_descrip, uint32_t token_ct, uint32_t fixed_l…
1387 …restrict range_list_flag, const char* __restrict file_descrip, uint32_t token_ct, uint32_t fixed_l…
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| H A D | plink2_glm.cc | 543 const uint32_t token_ct = CountTokens(line_start); in GlmLocalOpen() local
544 local_covar_ct = (token_ct - skip_ct) / local_sample_or_hap_ct; in GlmLocalOpen()
545 …if (unlikely((token_ct < skip_ct) || (local_covar_ct * local_sample_or_hap_ct + skip_ct != token_c… in GlmLocalOpen()
547 … of %u expected).\n", first_nonheader_line_idx, local_covar_fname, token_ct, (token_ct == local_sa… in GlmLocalOpen()
549 …u expected).\n", first_nonheader_line_idx, local_covar_fname, token_ct, skip_ct, (token_ct == loca… in GlmLocalOpen()
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| H A D | plink2_import.cc | 13670 const uint32_t token_ct = CountTokens(haps_line_start); in OxHapslegendToPgen() local
13685 if (unlikely(token_ct % 2)) { in OxHapslegendToPgen()
13689 sample_ct = token_ct / 2; in OxHapslegendToPgen()
13790 if (unlikely((token_ct < 7) || (!(token_ct % 2)))) { in OxHapslegendToPgen()
13794 sample_ct = (token_ct - 5) / 2; in OxHapslegendToPgen()
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| /dports/biology/plink/plink-ng-79b2df8c/2.0/include/ |
| H A D | plink2_string.cc | 1942 uint32_t token_ct = 0; in CountTokens() local
1945 ++token_ct; in CountTokens()
1948 return token_ct; in CountTokens()
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