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Searched refs:trace_G (Results 1 – 8 of 8) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dbslmmdap.h48 double trace_G; variable
H A Dlmm.h139 const gsl_vector *Uty, const double lambda, const double trace_G,
H A Dbslmm.cpp89 trace_G = cPar.trace_G; in CopyFromParam()
407 if (trace_G != 0) { in InitialMCMC()
409 (trace_G * (1 - cHyp.h) * exp(cHyp.logp) * (double)ns_test); in InitialMCMC()
453 double sigma_b2 = cHyp.h * (1.0 - cHyp.rho) / (trace_G * (1 - cHyp.h)); in CalcPosterior()
524 (trace_G * (1 - cHyp.h) * exp(cHyp.logp) * (double)ns_test); in CalcPosterior()
525 double sigma_b2 = cHyp.h * (1.0 - cHyp.rho) / (trace_G * (1 - cHyp.h)); in CalcPosterior()
H A Dbslmm.h65 double trace_G; variable
H A Dbslmmdap.cpp79 trace_G = cPar.trace_G; in CopyFromParam()
602 sigma_b2 = h * (1.0 - rho) / (trace_G * (1 - h)); in DAP_CalcBF()
H A Dgemma.cpp1775 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun()
2617 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 1); in BatchRun()
2619 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun()
2652 cPar.trace_G = 0.0; in BatchRun()
2657 cPar.trace_G += gsl_vector_get(eval, i); in BatchRun()
2659 cPar.trace_G /= (double)eval->size; in BatchRun()
2737 CalcPve(eval, UtW, &UtY_col.vector, cPar.l_remle_null, cPar.trace_G, in BatchRun()
2910 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun()
2924 CalcPve(eval, UtW, Uty, cPar.l_remle_null, cPar.trace_G, cPar.pve_null, in BatchRun()
3021 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun()
[all …]
H A Dparam.h217 double trace_G; variable
H A Dlmm.cpp2130 const gsl_vector *Uty, const double lambda, const double trace_G, in CalcPve() argument
2145 pve = trace_G * lambda / (trace_G * lambda + 1.0); in CalcPve()
2146 pve_se = trace_G / ((trace_G * lambda + 1.0) * (trace_G * lambda + 1.0)) * se; in CalcPve()