Searched refs:trace_G (Results 1 – 8 of 8) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | bslmmdap.h | 48 double trace_G; variable
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H A D | lmm.h | 139 const gsl_vector *Uty, const double lambda, const double trace_G,
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H A D | bslmm.cpp | 89 trace_G = cPar.trace_G; in CopyFromParam() 407 if (trace_G != 0) { in InitialMCMC() 409 (trace_G * (1 - cHyp.h) * exp(cHyp.logp) * (double)ns_test); in InitialMCMC() 453 double sigma_b2 = cHyp.h * (1.0 - cHyp.rho) / (trace_G * (1 - cHyp.h)); in CalcPosterior() 524 (trace_G * (1 - cHyp.h) * exp(cHyp.logp) * (double)ns_test); in CalcPosterior() 525 double sigma_b2 = cHyp.h * (1.0 - cHyp.rho) / (trace_G * (1 - cHyp.h)); in CalcPosterior()
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H A D | bslmm.h | 65 double trace_G; variable
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H A D | bslmmdap.cpp | 79 trace_G = cPar.trace_G; in CopyFromParam() 602 sigma_b2 = h * (1.0 - rho) / (trace_G * (1 - h)); in DAP_CalcBF()
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H A D | gemma.cpp | 1775 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun() 2617 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 1); in BatchRun() 2619 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun() 2652 cPar.trace_G = 0.0; in BatchRun() 2657 cPar.trace_G += gsl_vector_get(eval, i); in BatchRun() 2659 cPar.trace_G /= (double)eval->size; in BatchRun() 2737 CalcPve(eval, UtW, &UtY_col.vector, cPar.l_remle_null, cPar.trace_G, in BatchRun() 2910 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun() 2924 CalcPve(eval, UtW, Uty, cPar.l_remle_null, cPar.trace_G, cPar.pve_null, in BatchRun() 3021 cPar.trace_G = EigenDecomp_Zeroed(G, U, eval, 0); in BatchRun() [all …]
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H A D | param.h | 217 double trace_G; variable
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H A D | lmm.cpp | 2130 const gsl_vector *Uty, const double lambda, const double trace_G, in CalcPve() argument 2145 pve = trace_G * lambda / (trace_G * lambda + 1.0); in CalcPve() 2146 pve_se = trace_G / ((trace_G * lambda + 1.0) * (trace_G * lambda + 1.0)) * se; in CalcPve()
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